Z. japonica Nagirizaki
Zjn_sc00003.1.g02860.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G10920.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 461 46 461 e-175 112.1 64.9 75.9
Subject 517 46 516
Annot | Symbols: | L-Aspartase-like family protein | chr5:3441805-3443892 FORWARD LENGTH=517
NR ref|XP_004984633.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 461 1 461 0.0 112.1 91.8 95.7
Subject 517 1 517
Annot PREDICTED: argininosuccinate lyase, chloroplastic-like [Setaria italica]
IRGSP Os03t0305500-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 461 2 461 0.0 112.6 89.2 93.5
Subject 519 3 519
Annot
Sbicolor Sobic.001G397000.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 461 1 461 0.0 111.9 91.3 94.6
Subject 516 1 516
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g02860.1.sm.mkhc length: 461 aa.
IPR000362 Fumarate lyase
method AccNumber shortName E-value location
FPrintScan PR00149 FUMRATELYASE 1.1e-17 159-177
233-260
277-293
IPR008948 L-Aspartase-like
Molecular Function GO:0003824 catalytic activity    
superfamily SSF48557 L-aspartase-like 1.9e-111 60-458
IPR009049 Argininosuccinate lyase
Molecular Function GO:0004056 argininosuccinate lyase activity    
Biological Process GO:0042450 arginine biosynthetic process via ornithine    
HAMAP MF_00006 Arg_succ_lyase 30.395 59-455
HMMPanther PTHR11444:SF3 ARGININOSUCCINATE 4.2e-203 45-457
HMMTigr TIGR00838 argH: 4.5e-90 192-456
IPR020557 Fumarate lyase, conserved site
Molecular Function GO:0003824 catalytic activity    
PatternScan PS00163 FUMARATE_LYASES NA 277-286
IPR022761 Fumarate lyase, N-terminal
HMMPfam PF00206 Lyase_1 2.3e-22 63-191
225-302
IPR024083 Fumarase/histidase, N-terminal
Gene3D G3DSA:1.10.275.10 no description 3.9e-40 59-163
no_ID  
Gene3D G3DSA:1.10.40.30 no description 1.4e-25 378-433
Gene3D G3DSA:1.20.200.10 no description 2.5e-54 192-377
HMMPanther PTHR11444 ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE 4.2e-203 45-457
HMMPfam PF14698 ASL_C2 8.8e-25 365-434
Seg seg seg NA 10-26
35-59
Pseudomolecule
Chromosome Start End Strand
21258495612589210-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker exon 1428193 1428768 . - . ID=Zjn_sc00003.1.g02860.1.sm.mkhc:exon:6
Zjn_sc00003.1 maker exon 1428984 1429148 . - . ID=Zjn_sc00003.1.g02860.1.sm.mkhc:exon:5
Zjn_sc00003.1 maker exon 1429213 1429504 . - . ID=Zjn_sc00003.1.g02860.1.sm.mkhc:exon:4
Zjn_sc00003.1 maker exon 1430053 1430153 . - . ID=Zjn_sc00003.1.g02860.1.sm.mkhc:exon:3
Zjn_sc00003.1 maker exon 1431468 1431731 . - . ID=Zjn_sc00003.1.g02860.1.sm.mkhc:exon:2
Zjn_sc00003.1 maker exon 1432136 1432447 . - . ID=Zjn_sc00003.1.g02860.1.sm.mkhc:exon:1

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