Z. japonica Nagirizaki
Zjn_sc00003.1.g00540.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G08830.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 173 1 142 4e-63 87.9 67.6 71.7
Subject 152 1 142
Annot | Symbols: CSD1 | copper/zinc superoxide dismutase 1 | chr1:2827700-2829053 FORWARD LENGTH=152
NR gb|AEV43309.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 173 1 142 3e-74 87.9 82.1 82.1
Subject 152 1 142
Annot Cu/Zn superoxide dismutase [Zoysia japonica]
IRGSP Os07t0665200-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 173 1 142 5e-71 88.4 74.6 79.8
Subject 153 2 143
Annot
Sbicolor Sobic.001G371900.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 173 1 142 4e-74 87.9 79.2 80.9
Subject 152 1 142
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g00540.1.sm.mkhc length: 173 aa.
IPR001424 Superoxide dismutase, copper/zinc binding domain
method AccNumber shortName E-value location
Biological Process GO:0006801 superoxide metabolic process    
Molecular Function GO:0046872 metal ion binding    
Biological Process GO:0055114 oxidation-reduction process    
FPrintScan PR00068 CUZNDISMTASE 7.8e-43 43-65
79-88
98-120
123-149
Gene3D G3DSA:2.60.40.200 no description 2.9e-57 2-142
HMMPfam PF00080 Sod_Cu 3.6e-45 5-142
superfamily SSF49329 Cu,Zn 1.1e-50 1-142
IPR018152 Superoxide dismutase, copper/zinc, binding site
Molecular Function GO:0004784 superoxide dismutase activity    
Biological Process GO:0055114 oxidation-reduction process    
PatternScan PS00087 SOD_CU_ZN_1 NA 43-53
IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone
HMMPanther PTHR10003 SUPEROXIDE 1.2e-76 1-142
Pseudomolecule
Chromosome Start End Strand
21144485411447951-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker exon 288091 288469 . - . ID=Zjn_sc00003.1.g00540.1.sm.mkhc:exon:8
Zjn_sc00003.1 maker exon 288583 288626 . - . ID=Zjn_sc00003.1.g00540.1.sm.mkhc:exon:7
Zjn_sc00003.1 maker exon 289426 289501 . - . ID=Zjn_sc00003.1.g00540.1.sm.mkhc:exon:6
Zjn_sc00003.1 maker exon 289599 289630 . - . ID=Zjn_sc00003.1.g00540.1.sm.mkhc:exon:5
Zjn_sc00003.1 maker exon 289788 289883 . - . ID=Zjn_sc00003.1.g00540.1.sm.mkhc:exon:4
Zjn_sc00003.1 maker exon 289987 290088 . - . ID=Zjn_sc00003.1.g00540.1.sm.mkhc:exon:3
Zjn_sc00003.1 maker exon 290173 290260 . - . ID=Zjn_sc00003.1.g00540.1.sm.mkhc:exon:2
Zjn_sc00003.1 maker exon 290904 291188 . - . ID=Zjn_sc00003.1.g00540.1.sm.mkhc:exon:1

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