Z. japonica Nagirizaki
Zjn_sc00003.1.g00360.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G19390.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 439 29 225 2e-59 198.2 30.8 36.4
Subject 870 58 333
Annot | Symbols: | Rho GTPase activation protein (RhoGAP) with PH domain | chr5:6531906-6538206 FORWARD LENGTH=870
NR tpg|DAA45440.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 439 258 439 9e-93 189.3 38 40.1
Subject 831 630 811
Annot TPA: hypothetical protein ZEAMMB73_193936 [Zea mays]
IRGSP Os03t0356638-00_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 439 1 182 4e-82 191.3 37.1 39
Subject 840 1 263
Annot
Sbicolor Sobic.001G367100.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 439 258 439 4e-96 199.5 38.3 40.3
Subject 876 631 812
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00003.1.g00360.1.sm.mkhc length: 439 aa.
IPR001849 Pleckstrin homology domain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0005543 phospholipid binding    
ProfileScan PS50003 PH_DOMAIN 7.377 1-96
IPR011993 Pleckstrin homology-like domain
Gene3D G3DSA:2.30.29.30 no description 5.6e-05 41-100
IPR025757 Ternary complex factor MIP1, leucine-zipper
HMMPfam PF14389 Lzipper-MIP1 2.7e-16 257-328
no_ID  
Coil coil coiled-coil NA 139-167
296-331
Seg seg seg NA 17-25
90-104
298-308
320-331
404-420
Pseudomolecule
Chromosome Start End Strand
21134547411357424+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00003.1 maker exon 188711 188791 . + . ID=Zjn_sc00003.1.g00360.1.sm.mkhc:exon:1
Zjn_sc00003.1 maker exon 192273 192343 . + . ID=Zjn_sc00003.1.g00360.1.sm.mkhc:exon:2
Zjn_sc00003.1 maker exon 192432 192510 . + . ID=Zjn_sc00003.1.g00360.1.sm.mkhc:exon:3
Zjn_sc00003.1 maker exon 192616 192760 . + . ID=Zjn_sc00003.1.g00360.1.sm.mkhc:exon:4
Zjn_sc00003.1 maker exon 193063 193140 . + . ID=Zjn_sc00003.1.g00360.1.sm.mkhc:exon:5
Zjn_sc00003.1 maker exon 193774 193865 . + . ID=Zjn_sc00003.1.g00360.1.sm.mkhc:exon:6
Zjn_sc00003.1 maker exon 194387 194611 . + . ID=Zjn_sc00003.1.g00360.1.sm.mkhc:exon:7
Zjn_sc00003.1 maker exon 197687 197800 . + . ID=Zjn_sc00003.1.g00360.1.sm.mkhc:exon:8
Zjn_sc00003.1 maker exon 197878 198047 . + . ID=Zjn_sc00003.1.g00360.1.sm.mkhc:exon:9
Zjn_sc00003.1 maker exon 198825 198891 . + . ID=Zjn_sc00003.1.g00360.1.sm.mkhc:exon:10
Zjn_sc00003.1 maker exon 199836 200024 . + . ID=Zjn_sc00003.1.g00360.1.sm.mkhc:exon:11
Zjn_sc00003.1 maker exon 200653 200661 . + . ID=Zjn_sc00003.1.g00360.1.sm.mkhc:exon:12

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