Z. japonica Nagirizaki
Zjn_sc00002.1.g17250.1.am.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G09860.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
512 |
1 |
498 |
0.0 |
117 |
66.6 |
79.1 |
| Subject |
599 |
65 |
589 |
|
| Annot |
| Symbols: AtTHO1, THO1, AtHPR1, HPR1 | nuclear matrix protein-related | chr5:3066815-3070733 FORWARD LENGTH=599 |
| NR |
ref|XP_004986033.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
512 |
1 |
509 |
0.0 |
124.6 |
88.7 |
92.6 |
| Subject |
638 |
108 |
638 |
|
| Annot |
PREDICTED: THO complex subunit 1 [Setaria italica] |
| IRGSP |
Os03t0110400-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
512 |
1 |
504 |
0.0 |
124.6 |
84.8 |
90.6 |
| Subject |
638 |
113 |
635 |
|
| Annot |
|
| Sbicolor |
Sobic.001G536400.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
512 |
1 |
506 |
0.0 |
124.4 |
88.1 |
91.6 |
| Subject |
637 |
107 |
634 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00002.1.g17250.1.am.mkhc |
length: 512 aa. |
| IPR021861 |
THO complex, subunit THOC1 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF11957 |
efThoc1 |
2e-104 |
16-387 |
| no_ID |
|
| HMMPanther |
PTHR13265 |
THO |
6.4e-154 |
7-392 |
| HMMPanther |
PTHR13265:SF0 |
SUBFAMILY |
6.4e-154 |
7-392 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 1 | 18788622 | 18795367 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00002.1 |
maker |
exon |
7854684 |
7855669 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:20 |
| Zjn_sc00002.1 |
maker |
exon |
7855762 |
7855911 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:19 |
| Zjn_sc00002.1 |
maker |
exon |
7856527 |
7856577 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:18 |
| Zjn_sc00002.1 |
maker |
exon |
7856737 |
7856808 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:17 |
| Zjn_sc00002.1 |
maker |
exon |
7857153 |
7857219 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:16 |
| Zjn_sc00002.1 |
maker |
exon |
7857539 |
7857618 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:15 |
| Zjn_sc00002.1 |
maker |
exon |
7857721 |
7857837 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:14 |
| Zjn_sc00002.1 |
maker |
exon |
7858345 |
7858386 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:13 |
| Zjn_sc00002.1 |
maker |
exon |
7858573 |
7858638 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:12 |
| Zjn_sc00002.1 |
maker |
exon |
7858719 |
7858847 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:11 |
| Zjn_sc00002.1 |
maker |
exon |
7858954 |
7859025 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:10 |
| Zjn_sc00002.1 |
maker |
exon |
7859122 |
7859168 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:9 |
| Zjn_sc00002.1 |
maker |
exon |
7859310 |
7859375 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:8 |
| Zjn_sc00002.1 |
maker |
exon |
7859490 |
7859562 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:7 |
| Zjn_sc00002.1 |
maker |
exon |
7859800 |
7859871 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:6 |
| Zjn_sc00002.1 |
maker |
exon |
7859968 |
7860113 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:5 |
| Zjn_sc00002.1 |
maker |
exon |
7860203 |
7860293 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:4 |
| Zjn_sc00002.1 |
maker |
exon |
7860486 |
7860560 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:3 |
| Zjn_sc00002.1 |
maker |
exon |
7860726 |
7860809 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:2 |
| Zjn_sc00002.1 |
maker |
exon |
7861330 |
7861429 |
. |
- |
. |
ID=Zjn_sc00002.1.g17250.1.am.mkhc:exon:1 |