Z. japonica Nagirizaki
Zjn_sc00002.1.g16790.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G11590.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 105 1 93 5e-24 224.8 49.5 61.9
Subject 236 17 110
Annot | Symbols: TINY2 | Integrase-type DNA-binding superfamily protein | chr5:3727789-3728499 REVERSE LENGTH=236
NR ref|XP_004985962.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 105 14 93 2e-26 194.3 69.5 70.5
Subject 204 7 83
Annot PREDICTED: ethylene-responsive transcription factor ERF024-like [Setaria italica]
IRGSP Os03t0117900-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 105 24 93 1e-24 190.5 60 61
Subject 200 15 84
Annot
Sbicolor Sobic.001G531100.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 105 24 93 1e-26 200 62.9 63.8
Subject 210 18 87
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00002.1.g16790.1.am.mk length: 105 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 9.9e-07 35-46
72-92
Gene3D G3DSA:3.30.730.10 no description 2.2e-26 34-90
HMMPfam PF00847 AP2 1.9e-15 33-83
HMMSmart SM00380 DNA-binding 7.2e-25 34-96
ProfileScan PS51032 AP2_ERF 20.481 34-90
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 6.4e-20 33-93
no_ID  
HMMPanther PTHR31985 FAMILY 1.5e-32 24-90
Seg seg seg NA 69-87
Pseudomolecule
Chromosome Start End Strand
11859429218594845-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00002.1 maker_non_over exon 7660354 7660390 . - . ID=Zjn_sc00002.1.g16790.1.am.mk:exon:2
Zjn_sc00002.1 maker_non_over exon 7660627 7660907 . - . ID=Zjn_sc00002.1.g16790.1.am.mk:exon:1

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