Z. japonica Nagirizaki
Zjn_sc00002.1.g16160.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G17990.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 296 15 193 7e-53 150 38.5 45.6
Subject 444 89 255
Annot | Symbols: TRP1, pat1 | tryptophan biosynthesis 1 | chr5:5957330-5959681 FORWARD LENGTH=444
NR gb|AFW89746.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 296 1 296 e-132 111.5 88.9 93.6
Subject 330 1 330
Annot hypothetical protein ZEAMMB73_227948 [Zea mays]
IRGSP Os03t0126000-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 296 166 294 1e-64 133.4 40.5 41.9
Subject 395 259 395
Annot
Sbicolor Sobic.001G523800.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 296 166 296 2e-67 131.8 42.6 43.2
Subject 390 252 390
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00002.1.g16160.1.sm.mkhc length: 296 aa.
IPR000312 Glycosyl transferase, family 3
method AccNumber shortName E-value location
Biological Process GO:0008152 metabolic process    
Molecular Function GO:0016757 transferase activity, transferring glycosyl groups    
Gene3D G3DSA:3.40.1030.10 no description 4.5e-38 103-166
167-294
HMMPfam PF00591 Glycos_transf_3 4.8e-23 102-167
166-280
superfamily SSF52418 Nucleoside 6.1e-48 101-293
IPR017459 Glycosyl transferase family 3, N-terminal domain
HMMPfam PF02885 Glycos_trans_3N 6.1e-14 33-93
superfamily SSF47648 Nucleoside 6.4e-14 31-99
no_ID  
Gene3D G3DSA:1.20.970.10 no description 1.2e-13 35-94
HMMPanther PTHR11922 GMP 3.8e-73 1-292
HMMPanther PTHR11922:SF6 TRP1 3.8e-73 1-292
Seg seg seg NA 9-32
48-69
124-136
139-150
246-258
Pseudomolecule
Chromosome Start End Strand
11831674918322827+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00002.1 maker exon 7382811 7382870 . + . ID=Zjn_sc00002.1.g16160.1.sm.mkhc:exon:1
Zjn_sc00002.1 maker exon 7383696 7383740 . + . ID=Zjn_sc00002.1.g16160.1.sm.mkhc:exon:2
Zjn_sc00002.1 maker exon 7383829 7383972 . + . ID=Zjn_sc00002.1.g16160.1.sm.mkhc:exon:3
Zjn_sc00002.1 maker exon 7384060 7384221 . + . ID=Zjn_sc00002.1.g16160.1.sm.mkhc:exon:4
Zjn_sc00002.1 maker exon 7384303 7384386 . + . ID=Zjn_sc00002.1.g16160.1.sm.mkhc:exon:5
Zjn_sc00002.1 maker exon 7385989 7386055 . + . ID=Zjn_sc00002.1.g16160.1.sm.mkhc:exon:6
Zjn_sc00002.1 maker exon 7386230 7386289 . + . ID=Zjn_sc00002.1.g16160.1.sm.mkhc:exon:7
Zjn_sc00002.1 maker exon 7386598 7386716 . + . ID=Zjn_sc00002.1.g16160.1.sm.mkhc:exon:8
Zjn_sc00002.1 maker exon 7387033 7387167 . + . ID=Zjn_sc00002.1.g16160.1.sm.mkhc:exon:9
Zjn_sc00002.1 maker exon 7387250 7387431 . + . ID=Zjn_sc00002.1.g16160.1.sm.mkhc:exon:10
Zjn_sc00002.1 maker exon 7387673 7388009 . + . ID=Zjn_sc00002.1.g16160.1.sm.mkhc:exon:11
Zjn_sc00002.1 maker exon 7388421 7388889 . + . ID=Zjn_sc00002.1.g16160.1.sm.mkhc:exon:12

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