Z. japonica Nagirizaki
Zjn_sc00002.1.g15890.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT2G42120.2 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
387 |
8 |
213 |
3e-67 |
113.7 |
36.2 |
42.1 |
| Subject |
440 |
10 |
266 |
|
| Annot |
| Symbols: POLD2 | DNA polymerase delta small subunit | chr2:17563282-17565965 REVERSE LENGTH=440 |
| NR |
ref|XP_004985872.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
387 |
1 |
218 |
1e-95 |
112.4 |
48.1 |
51.2 |
| Subject |
435 |
1 |
267 |
|
| Annot |
PREDICTED: DNA polymerase delta small subunit [Setaria italica] |
| IRGSP |
Os03t0128500-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
387 |
7 |
218 |
3e-90 |
110.9 |
44.4 |
48.1 |
| Subject |
429 |
1 |
261 |
|
| Annot |
|
| Sbicolor |
Sobic.001G521100.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
387 |
1 |
218 |
6e-97 |
112.4 |
47.8 |
50.6 |
| Subject |
435 |
1 |
267 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00002.1.g15890.1.sm.mkhc |
length: 387 aa. |
| IPR007185 |
DNA polymerase alpha/epsilon, subunit B |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Molecular Function |
GO:0003887 |
DNA-directed DNA polymerase activity |
|
|
| Biological Process |
GO:0006260 |
DNA replication |
|
|
| HMMPfam |
PF04042 |
DNA_pol_E_B |
8.2e-16 |
209-276 |
| IPR024826 |
DNA polymerase delta/II small subunit family |
| HMMPanther |
PTHR10416 |
DNA |
1.8e-63 |
7-283 |
| no_ID |
|
| HMMPanther |
PTHR10416:SF0 |
DNA |
1.8e-63 |
7-283 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 1 | 18190392 | 18194937 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00002.1 |
maker |
exon |
7256454 |
7256504 |
. |
+ |
. |
ID=Zjn_sc00002.1.g15890.1.sm.mkhc:exon:1 |
| Zjn_sc00002.1 |
maker |
exon |
7256622 |
7256795 |
. |
+ |
. |
ID=Zjn_sc00002.1.g15890.1.sm.mkhc:exon:2 |
| Zjn_sc00002.1 |
maker |
exon |
7257524 |
7257647 |
. |
+ |
. |
ID=Zjn_sc00002.1.g15890.1.sm.mkhc:exon:3 |
| Zjn_sc00002.1 |
maker |
exon |
7257809 |
7257913 |
. |
+ |
. |
ID=Zjn_sc00002.1.g15890.1.sm.mkhc:exon:4 |
| Zjn_sc00002.1 |
maker |
exon |
7258023 |
7258138 |
. |
+ |
. |
ID=Zjn_sc00002.1.g15890.1.sm.mkhc:exon:5 |
| Zjn_sc00002.1 |
maker |
exon |
7258393 |
7258461 |
. |
+ |
. |
ID=Zjn_sc00002.1.g15890.1.sm.mkhc:exon:6 |
| Zjn_sc00002.1 |
maker |
exon |
7258903 |
7259008 |
. |
+ |
. |
ID=Zjn_sc00002.1.g15890.1.sm.mkhc:exon:7 |
| Zjn_sc00002.1 |
maker |
exon |
7259223 |
7259324 |
. |
+ |
. |
ID=Zjn_sc00002.1.g15890.1.sm.mkhc:exon:8 |
| Zjn_sc00002.1 |
maker |
exon |
7260609 |
7260855 |
. |
+ |
. |
ID=Zjn_sc00002.1.g15890.1.sm.mkhc:exon:9 |
| Zjn_sc00002.1 |
maker |
exon |
7260930 |
7260999 |
. |
+ |
. |
ID=Zjn_sc00002.1.g15890.1.sm.mkhc:exon:10 |