Z. japonica Nagirizaki
Zjn_sc00002.1.g15810.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G42970.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 423 2 422 0.0 105.7 83 90.8
Subject 447 31 447
Annot | Symbols: GAPB | glyceraldehyde-3-phosphate dehydrogenase B subunit | chr1:16127552-16129584 FORWARD LENGTH=447
NR dbj|BAJ86633.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 423 4 422 0.0 105 89.8 95.5
Subject 444 25 443
Annot predicted protein [Hordeum vulgare subsp. vulgare]
IRGSP Os03t0129300-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 423 4 422 0.0 105 91.3 96
Subject 444 25 443
Annot
Sbicolor Sobic.001G519800.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 423 4 423 0.0 105 92.7 96.9
Subject 444 25 444
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00002.1.g15810.1.am.mk length: 423 aa.
IPR003823 Domain of unknown function CP12
method AccNumber shortName E-value location
HMMPfam PF02672 CP12 1.5e-07 401-422
IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I
Biological Process GO:0006006 glucose metabolic process    
Molecular Function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    
Molecular Function GO:0050661 NADP binding    
Molecular Function GO:0051287 NAD binding    
Biological Process GO:0055114 oxidation-reduction process    
HMMTigr TIGR01534 GAPDH-I: 1.1e-131 58-384
IPR016040 NAD(P)-binding domain
Gene3D G3DSA:3.40.50.720 no description 4.2e-65 55-218
IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
Molecular Function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF00044 Gp_dh_N 2e-51 58-210
HMMSmart SM00846 Glyceraldehyde 1.4e-75 57-210
IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
Molecular Function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF02800 Gp_dh_C 3e-67 215-372
IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site
Molecular Function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    
Biological Process GO:0055114 oxidation-reduction process    
PatternScan PS00071 GAPDH NA 208-215
IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family
Molecular Function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    
Biological Process GO:0055114 oxidation-reduction process    
FPrintScan PR00078 G3PDHDRGNASE 3e-39 166-179
204-222
231-247
287-304
328-343
HMMPanther PTHR10836 GLYCERALDEHYDE 7e-194 37-393
no_ID  
Gene3D G3DSA:3.30.360.10 no description 9.3e-71 219-374
Seg seg seg NA 244-261
superfamily SSF51735 NAD(P)-binding 8.1e-58 57-227
superfamily SSF55347 Glyceraldehyde-3-phosphate 2.3e-77 210-373
Pseudomolecule
Chromosome Start End Strand
11816117618163167-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00002.1 maker_non_over exon 7227238 7227373 . - . ID=Zjn_sc00002.1.g15810.1.am.mk:exon:7
Zjn_sc00002.1 maker_non_over exon 7227493 7227949 . - . ID=Zjn_sc00002.1.g15810.1.am.mk:exon:6
Zjn_sc00002.1 maker_non_over exon 7228034 7228095 . - . ID=Zjn_sc00002.1.g15810.1.am.mk:exon:5
Zjn_sc00002.1 maker_non_over exon 7228211 7228371 . - . ID=Zjn_sc00002.1.g15810.1.am.mk:exon:4
Zjn_sc00002.1 maker_non_over exon 7228489 7228656 . - . ID=Zjn_sc00002.1.g15810.1.am.mk:exon:3
Zjn_sc00002.1 maker_non_over exon 7228771 7228932 . - . ID=Zjn_sc00002.1.g15810.1.am.mk:exon:2
Zjn_sc00002.1 maker_non_over exon 7229104 7229229 . - . ID=Zjn_sc00002.1.g15810.1.am.mk:exon:1

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