Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00002.1.g15280.1.sm.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00002.1)

BLAST

TAIR10	AT1G20330.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	329	2	320	e-148	109.7	72.6	83.9
		Subject	361	40	354
		Annot	\| Symbols: SMT2, CVP1, FRL1 \| sterol methyltransferase 2 \| chr1:7038968-7040053 REVERSE LENGTH=361
NR	ref\|XP_004985796.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	329	1	329	0.0	111.6	95.7	97.9
		Subject	367	40	367
		Annot	PREDICTED: 24-methylenesterol C-methyltransferase 2 [Setaria italica]
IRGSP	Os03t0136200-01_chr03_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	329	1	320	0.0	110.3	91.8	94.5
		Subject	363	40	359
		Annot
Sbicolor	Sobic.001G513600.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	329	1	320	0.0	111.6	93.6	95.7
		Subject	367	40	360
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR013216	Methyltransferase type 11
Zjn_sc00002.1.g15280.1.sm.mk				length: 329 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0008152	metabolic process
Molecular Function	GO:0008168	methyltransferase activity
HMMPfam	PF08241	Methyltransf_11	6.7e-22	94-191
IPR013705	Sterol methyltransferase C-terminal
Biological Process	GO:0006694	steroid biosynthetic process
Molecular Function	GO:0008168	methyltransferase activity
HMMPfam	PF08498	Sterol_MT_C	9.3e-14	258-320
IPR025769	ERGosterol biosynthesis methyltransferase, plant
Molecular Function	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity
ProfileScan	PS51596	SAM_MT_ERG6_2	179.958	1-327
no_ID
Gene3D	G3DSA:3.40.50.150	no description	6e-59	46-320
HMMPanther	PTHR10108	METHYLTRANSFERASE	5.7e-151	1-320
HMMPanther	PTHR10108:SF21	S-ADENOSYL-L-METHIONINE:DELTA24-STEROL-C-METHYLTRANSFERASET[1-320]	5.7e-151
Seg	seg	seg	NA	26-31 270-280
superfamily	SSF53335	S-adenosyl-L-methionine-dependent	2e-58	41-320

Pseudomolecule

Chromosome	Start	End	Strand
1	17979748	17980737	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00002.1	maker_non_over	exon	7045810	7046799	.	-	.	ID=Zjn_sc00002.1.g15280.1.sm.mk:exon:1