Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00002.1.g14110.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00002.1)

BLAST

TAIR10	AT5G03415.2		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	220	31	151	1e-23	172.3	31.4	35.9
		Subject	379	32	139
		Annot	\| Symbols: DPB \| Transcription factor DP \| chr5:842842-845200 FORWARD LENGTH=379
NR	ref\|NP_001169170.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	220	1	220	3e-52	175.9	62.3	73.2
		Subject	387	1	252
		Annot	uncharacterized protein LOC100383020 [Zea mays] gi\|223975291\|gb\|ACN31833.1\| unknown [Zea mays] gi\|413957023\|gb\|AFW89672.1\| hypothetical protein ZEAMMB73_476307 [Zea mays]
IRGSP	Os03t0152100-01_chr03_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	220	73	158	6e-35	48.6	33.2	36.8
		Subject	107	9	105
		Annot
Sbicolor	Sobic.001G501000.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	220	9	200	1e-52	178.2	59.5	69.1
		Subject	392	10	230
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR011991	Winged helix-turn-helix DNA-binding domain
Zjn_sc00002.1.g14110.1.sm.mkhc				length: 220 aa.
method	AccNumber	shortName	E-value	location
Gene3D	G3DSA:1.10.10.10	no description	1.5e-11	102-154
IPR014889	Transcription factor DP, C-terminal
HMMPfam	PF08781	DP	2.1e-08	158-182
IPR015648	Transcription factor DP
HMMPanther	PTHR12548	TRANSCRIPTION	2.8e-20	71-148
no_ID
HMMPanther	PTHR12548:SF9	TRANSCRIPTION	2.8e-20	71-148
Seg	seg	seg	NA	4-49 62-79

Pseudomolecule

Chromosome	Start	End	Strand
1	17458657	17462620	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00002.1	maker	exon	6524719	6524839	.	-	.	ID=Zjn_sc00002.1.g14110.1.sm.mkhc:exon:6
Zjn_sc00002.1	maker	exon	6525991	6526061	.	-	.	ID=Zjn_sc00002.1.g14110.1.sm.mkhc:exon:5
Zjn_sc00002.1	maker	exon	6526771	6526848	.	-	.	ID=Zjn_sc00002.1.g14110.1.sm.mkhc:exon:4
Zjn_sc00002.1	maker	exon	6527370	6527413	.	-	.	ID=Zjn_sc00002.1.g14110.1.sm.mkhc:exon:3
Zjn_sc00002.1	maker	exon	6527696	6527739	.	-	.	ID=Zjn_sc00002.1.g14110.1.sm.mkhc:exon:2
Zjn_sc00002.1	maker	exon	6528378	6528682	.	-	.	ID=Zjn_sc00002.1.g14110.1.sm.mkhc:exon:1