Z. japonica Nagirizaki
Zjn_sc00002.1.g12440.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G72360.3 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 323 1 155 3e-29 80.5 20.7 30.3
Subject 260 1 134
Annot | Symbols: HRE1 | Integrase-type DNA-binding superfamily protein | chr1:27241904-27242777 FORWARD LENGTH=260
NR ref|XP_012698500.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 323 1 323 2e-75 95 62.8 70.6
Subject 307 1 307
Annot PREDICTED: ethylene-responsive transcription factor ERF073-like [Setaria italica]
IRGSP Os03t0183300-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 323 1 323 1e-59 101.9 56.3 70.3
Subject 329 1 329
Annot
Sbicolor Sobic.001G481200.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 323 1 323 3e-69 100.3 62.8 72.8
Subject 324 1 324
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00002.1.g12440.1.sm.mk length: 323 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 9.8e-13 95-106
133-153
Gene3D G3DSA:3.30.730.10 no description 3.9e-30 94-152
HMMPfam PF00847 AP2 5.9e-16 94-143
HMMSmart SM00380 DNA-binding 3.6e-38 94-157
ProfileScan PS51032 AP2_ERF 24.843 94-151
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 1.6e-23 93-154
no_ID  
HMMPanther PTHR31190 FAMILY 7.4e-52 2-321
HMMPanther PTHR31190:SF0 SUBFAMILY 7.4e-52 2-321
Seg seg seg NA 36-57
127-138
154-162
248-263
Pseudomolecule
Chromosome Start End Strand
11673726716738238+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00002.1 maker_non_over exon 5803329 5804300 . + . ID=Zjn_sc00002.1.g12440.1.sm.mk:exon:1

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