Z. japonica Nagirizaki
Zjn_sc00002.1.g12270.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G49980.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 612 34 612 0.0 101.1 53.4 68.5
Subject 619 52 619
Annot | Symbols: AFB5 | auxin F-box protein 5 | chr5:20334420-20336531 REVERSE LENGTH=619
NR ref|XP_002465737.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 612 1 612 0.0 98.4 83 89.2
Subject 602 1 602
Annot hypothetical protein SORBIDRAFT_01g044720 [Sorghum bicolor] gi|241919591|gb|EER92735.1| hypothetical protein SORBIDRAFT_01g044720 [Sorghum bicolor]
IRGSP Os02t0759700-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 612 32 612 0.0 104.1 54.6 69.3
Subject 637 63 637
Annot
Sbicolor Sobic.001G477400.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 612 1 612 0.0 98.4 83 89.2
Subject 602 1 602
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00002.1.g12270.1.sm.mkhc length: 612 aa.
IPR006553 Leucine-rich repeat, cysteine-containing subtype
method AccNumber shortName E-value location
HMMSmart SM00367 Leucine-rich 22 133-157
410-434
470-493
494-518
519-543
no_ID  
Gene3D G3DSA:3.80.10.10 no description 2.7e-17 32-274
399-570
HMMPanther PTHR23125 F-BOX/LEUCINE 7.8e-231 31-596
HMMPanther PTHR23125:SF100PREDICTED PROTEIN 7.8e-231 31-596
HMMPfam PF13516 LRR_6 0.14 519-537
Seg seg seg NA 22-33
116-135
147-161
superfamily SSF52047 RNI-like 5.3e-28 50-573
Pseudomolecule
Chromosome Start End Strand
11665226316654754+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00002.1 maker exon 5718325 5718881 . + . ID=Zjn_sc00002.1.g12270.1.sm.mkhc:exon:1
Zjn_sc00002.1 maker exon 5719001 5719523 . + . ID=Zjn_sc00002.1.g12270.1.sm.mkhc:exon:2
Zjn_sc00002.1 maker exon 5719614 5720816 . + . ID=Zjn_sc00002.1.g12270.1.sm.mkhc:exon:3

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