Z. japonica Nagirizaki
Zjn_sc00002.1.g11520.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G66730.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 562 1 505 e-112 89 44.3 53.4
Subject 500 3 457
Annot | Symbols: | C2H2-like zinc finger protein | chr5:26641914-26643883 REVERSE LENGTH=500
NR ref|XP_004985335.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 562 1 562 0.0 95.6 76 79.9
Subject 537 1 537
Annot PREDICTED: protein indeterminate-domain 1-like [Setaria italica]
IRGSP Os03t0197800-00_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 562 31 562 e-168 98.2 65.3 71
Subject 552 33 552
Annot
Sbicolor Sobic.001G469100.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 562 1 562 0.0 93.4 75.6 79.5
Subject 525 1 525
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00002.1.g11520.1.sm.mkhc length: 562 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
HMMPfam PF00096 zf-C2H2 0.0051 79-101
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 81-101
ProfileScan PS50157 ZINC_FINGER_C2H2_2 10.949 79-101
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 0.00016 78-101
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 90 79-101
120-150
155-175
no_ID  
FPrintScan PR01217 PRICHEXTENSN 7.7e-09 230-242
247-263
277-289
383-400
426-451
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 3.9e-124 28-212
HMMPanther PTHR10593:SF17 SUBFAMILY 3.9e-124 28-212
HMMPfam PF13894 zf-C2H2_4 0.3 155-177
Seg seg seg NA 17-38
48-63
153-163
223-266
284-299
309-321
328-337
384-395
413-417
427-438
524-538
superfamily SSF57667 C2H2 0.0002 150-193
78-103
Pseudomolecule
Chromosome Start End Strand
11635402616356496-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00002.1 maker exon 5420088 5421093 . - . ID=Zjn_sc00002.1.g11520.1.sm.mkhc:exon:4
Zjn_sc00002.1 maker exon 5421580 5421815 . - . ID=Zjn_sc00002.1.g11520.1.sm.mkhc:exon:3
Zjn_sc00002.1 maker exon 5421908 5422361 . - . ID=Zjn_sc00002.1.g11520.1.sm.mkhc:exon:2
Zjn_sc00002.1 maker exon 5422438 5422558 . - . ID=Zjn_sc00002.1.g11520.1.sm.mkhc:exon:1

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