Z. japonica Nagirizaki
Zjn_sc00002.1.g11080.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G70210.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 339 84 238 2e-31 100 22.7 29.2
Subject 339 80 238
Annot | Symbols: CYCD1;1, ATCYCD1;1 | CYCLIN D1;1 | chr1:26440015-26441980 FORWARD LENGTH=339
NR ref|XP_004985289.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 339 20 339 e-131 100.9 72.3 79.4
Subject 342 21 342
Annot PREDICTED: cyclin-D5-3-like [Setaria italica]
IRGSP Os03t0203800-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 339 1 339 e-105 101.8 61.9 75.5
Subject 345 1 345
Annot
Sbicolor Sobic.001G464800.2.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 339 1 339 e-115 101.2 70.2 78.2
Subject 343 1 343
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00002.1.g11080.1.am.mk length: 339 aa.
IPR006671 Cyclin, N-terminal
method AccNumber shortName E-value location
HMMPfam PF00134 Cyclin_N 9.5e-26 81-183
IPR013763 Cyclin-like
Gene3D G3DSA:1.10.472.10 no description 0.00067 83-177
178-246
HMMSmart SM00385 domain 4.5e-14 91-177
superfamily SSF47954 Cyclin-like 1.1e-28 43-191
no_ID  
HMMPanther PTHR10177 CYCLINE 8.5e-56 25-316
HMMPanther PTHR10177:SF76 CYCLIN-D 8.5e-56 25-316
Seg seg seg NA 4-19
26-40
291-304
310-326
Pseudomolecule
Chromosome Start End Strand
11617193716173407+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00002.1 maker_non_over exon 5237999 5238283 . + . ID=Zjn_sc00002.1.g11080.1.am.mk:exon:1
Zjn_sc00002.1 maker_non_over exon 5238386 5238472 . + . ID=Zjn_sc00002.1.g11080.1.am.mk:exon:2
Zjn_sc00002.1 maker_non_over exon 5238599 5238887 . + . ID=Zjn_sc00002.1.g11080.1.am.mk:exon:3
Zjn_sc00002.1 maker_non_over exon 5238977 5239116 . + . ID=Zjn_sc00002.1.g11080.1.am.mk:exon:4
Zjn_sc00002.1 maker_non_over exon 5239251 5239469 . + . ID=Zjn_sc00002.1.g11080.1.am.mk:exon:5

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