Z. japonica Nagirizaki
Zjn_sc00002.1.g10350.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G08020.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 646 6 642 0.0 93.5 59.6 75.1
Subject 604 4 599
Annot | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B | chr5:2572107-2574879 FORWARD LENGTH=604
NR ref|XP_004985197.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 646 1 645 0.0 96.4 78.2 86.8
Subject 623 1 622
Annot PREDICTED: replication protein A 70 kDa DNA-binding subunit B [Setaria italica]
IRGSP Os03t0214100-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 646 2 645 0.0 97.5 73.8 85.6
Subject 630 4 629
Annot
Sbicolor Sobic.001G456500.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 646 1 645 0.0 96.4 77.6 87.5
Subject 623 1 622
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00002.1.g10350.1.sm.mkhc length: 646 aa.
IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF01336 tRNA_anti-codon 3.4e-09 214-300
IPR004591 Replication factor-a protein 1 Rpa1
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006260 DNA replication    
HMMTigr TIGR00617 rpa1: 3.4e-205 5-642
IPR007199 Replication factor-A protein 1, N-terminal
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006260 DNA replication    
HMMPfam PF04057 Rep-A_N 2.3e-18 7-104
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 1.2e-41 5-105
203-305
316-446
501-643
superfamily SSF50249 Nucleic 2.2e-12 468-646
317-453
198-316
3-109
IPR013955 Replication factor A, C-terminal
HMMPfam PF08646 Rep_fac-A_C 2.1e-41 490-636
no_ID  
HMMPanther PTHR23273 REPLICATION 6.6e-196 1-643
Seg seg seg NA 71-82
299-308
Pseudomolecule
Chromosome Start End Strand
11585385215857878-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00002.1 maker exon 4919914 4921006 . - . ID=Zjn_sc00002.1.g10350.1.sm.mkhc:exon:12
Zjn_sc00002.1 maker exon 4921171 4921291 . - . ID=Zjn_sc00002.1.g10350.1.sm.mkhc:exon:11
Zjn_sc00002.1 maker exon 4921390 4921553 . - . ID=Zjn_sc00002.1.g10350.1.sm.mkhc:exon:10
Zjn_sc00002.1 maker exon 4921654 4921798 . - . ID=Zjn_sc00002.1.g10350.1.sm.mkhc:exon:9
Zjn_sc00002.1 maker exon 4921879 4921957 . - . ID=Zjn_sc00002.1.g10350.1.sm.mkhc:exon:8
Zjn_sc00002.1 maker exon 4922064 4922188 . - . ID=Zjn_sc00002.1.g10350.1.sm.mkhc:exon:7
Zjn_sc00002.1 maker exon 4922286 4922388 . - . ID=Zjn_sc00002.1.g10350.1.sm.mkhc:exon:6
Zjn_sc00002.1 maker exon 4922472 4922739 . - . ID=Zjn_sc00002.1.g10350.1.sm.mkhc:exon:5
Zjn_sc00002.1 maker exon 4922845 4923022 . - . ID=Zjn_sc00002.1.g10350.1.sm.mkhc:exon:4
Zjn_sc00002.1 maker exon 4923116 4923400 . - . ID=Zjn_sc00002.1.g10350.1.sm.mkhc:exon:3
Zjn_sc00002.1 maker exon 4923519 4923659 . - . ID=Zjn_sc00002.1.g10350.1.sm.mkhc:exon:2
Zjn_sc00002.1 maker exon 4923804 4923940 . - . ID=Zjn_sc00002.1.g10350.1.sm.mkhc:exon:1

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