Z. japonica Nagirizaki
Zjn_sc00002.1.g10000.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G18100.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 110 1 106 1e-28 149.1 56.4 67.3
Subject 164 1 102
Annot | Symbols: CSD3 | copper/zinc superoxide dismutase 3 | chr5:5987221-5988706 FORWARD LENGTH=164
NR gb|EEC81743.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 110 1 106 2e-45 169.1 81.8 88.2
Subject 186 1 106
Annot hypothetical protein OsI_25396 [Oryza sativa Indica Group]
IRGSP Os03t0219200-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 110 4 106 3e-47 147.3 80.9 86.4
Subject 162 2 104
Annot
Sbicolor Sobic.001G453800.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 110 1 103 9e-43 148.2 76.4 81.8
Subject 163 1 102
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00002.1.g10000.1.sm.mkhc length: 110 aa.
IPR001424 Superoxide dismutase, copper/zinc binding domain
method AccNumber shortName E-value location
Biological Process GO:0006801 superoxide metabolic process    
Molecular Function GO:0046872 metal ion binding    
Biological Process GO:0055114 oxidation-reduction process    
FPrintScan PR00068 CUZNDISMTASE 7.9e-16 53-75
89-98
Gene3D G3DSA:2.60.40.200 no description 1e-29 19-104
HMMPfam PF00080 Sod_Cu 4.8e-27 19-103
superfamily SSF49329 Cu,Zn 2.9e-26 8-103
IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone
HMMPanther PTHR10003 SUPEROXIDE 1.2e-38 11-104
no_ID  
Seg seg seg NA 3-19
Pseudomolecule
Chromosome Start End Strand
11569623115699261+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00002.1 maker exon 4762293 4762398 . + . ID=Zjn_sc00002.1.g10000.1.sm.mkhc:exon:1
Zjn_sc00002.1 maker exon 4762483 4762584 . + . ID=Zjn_sc00002.1.g10000.1.sm.mkhc:exon:2
Zjn_sc00002.1 maker exon 4762822 4762917 . + . ID=Zjn_sc00002.1.g10000.1.sm.mkhc:exon:3
Zjn_sc00002.1 maker exon 4764914 4765323 . + . ID=Zjn_sc00002.1.g10000.1.sm.mkhc:exon:4

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