Z. japonica Nagirizaki
Zjn_sc00002.1.g09970.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT3G25900.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
316 |
4 |
315 |
e-129 |
103.2 |
65.5 |
81.3 |
| Subject |
326 |
10 |
321 |
|
| Annot |
| Symbols: HMT-1, ATHMT-1 | Homocysteine S-methyltransferase family protein | chr3:9480964-9482684 FORWARD LENGTH=326 |
| NR |
ref|XP_004985165.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
316 |
1 |
316 |
e-170 |
102.2 |
92.1 |
96.5 |
| Subject |
323 |
1 |
316 |
|
| Annot |
PREDICTED: homocysteine S-methyltransferase 1 [Setaria italica] gi|514820965|ref|XP_004985166.1| PREDICTED: homocysteine S-methyltransferase 1 [Setaria italica] |
| IRGSP |
Os03t0221200-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
316 |
3 |
274 |
e-145 |
89.2 |
76.3 |
82.3 |
| Subject |
282 |
4 |
275 |
|
| Annot |
|
| Sbicolor |
Sobic.001G453100.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
316 |
1 |
316 |
e-170 |
102.2 |
89.6 |
96.2 |
| Subject |
323 |
1 |
316 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00002.1.g09970.1.sm.mkhc |
length: 316 aa. |
| IPR003726 |
Homocysteine S-methyltransferase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0008898 |
homocysteine S-methyltransferase activity |
|
|
| Gene3D |
G3DSA:3.20.20.330 |
no description |
6.6e-90 |
12-315 |
| HMMPfam |
PF02574 |
S-methyl_trans |
2.1e-79 |
15-315 |
| ProfileScan |
PS50970 |
HCY |
50.132 |
3-316 |
| superfamily |
SSF82282 |
Homocysteine |
9.2e-80 |
1-315 |
| no_ID |
|
| HMMPanther |
PTHR21091 |
METHYLTETRAHYDROFOLATE:HOMOCYSTEINE |
1.8e-110 |
11-315 |
| HMMPanther |
PTHR21091:SF6 |
HOMOCYSTEINE |
1.8e-110 |
11-315 |
| Seg |
seg |
seg |
NA |
180-191 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 1 | 15679101 | 15680943 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00002.1 |
maker |
exon |
4745163 |
4745288 |
. |
- |
. |
ID=Zjn_sc00002.1.g09970.1.sm.mkhc:exon:7 |
| Zjn_sc00002.1 |
maker |
exon |
4745393 |
4745464 |
. |
- |
. |
ID=Zjn_sc00002.1.g09970.1.sm.mkhc:exon:6 |
| Zjn_sc00002.1 |
maker |
exon |
4745557 |
4745760 |
. |
- |
. |
ID=Zjn_sc00002.1.g09970.1.sm.mkhc:exon:5 |
| Zjn_sc00002.1 |
maker |
exon |
4745871 |
4746000 |
. |
- |
. |
ID=Zjn_sc00002.1.g09970.1.sm.mkhc:exon:4 |
| Zjn_sc00002.1 |
maker |
exon |
4746099 |
4746304 |
. |
- |
. |
ID=Zjn_sc00002.1.g09970.1.sm.mkhc:exon:3 |
| Zjn_sc00002.1 |
maker |
exon |
4746465 |
4746521 |
. |
- |
. |
ID=Zjn_sc00002.1.g09970.1.sm.mkhc:exon:2 |
| Zjn_sc00002.1 |
maker |
exon |
4746853 |
4747005 |
. |
- |
. |
ID=Zjn_sc00002.1.g09970.1.sm.mkhc:exon:1 |