Z. japonica Nagirizaki
Zjn_sc00002.1.g09820.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G16570.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
349 |
1 |
346 |
0.0 |
102 |
86.5 |
93.4 |
| Subject |
356 |
1 |
354 |
|
| Annot |
| Symbols: GLN1;4 | glutamine synthetase 1;4 | chr5:5421898-5424523 REVERSE LENGTH=356 |
| NR |
gb|AAN05339.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
349 |
1 |
349 |
0.0 |
100 |
92 |
96.6 |
| Subject |
349 |
1 |
349 |
|
| Annot |
Putative GLN1_ORYSA GLUTAMINE SYNTHETASE ROOT ISOZYME (GLUTAMATE--AMMONIA LIGASE) [Oryza sativa Japonica Group] |
| IRGSP |
Os03t0223400-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
349 |
1 |
349 |
0.0 |
102.3 |
92 |
96.6 |
| Subject |
357 |
1 |
357 |
|
| Annot |
|
| Sbicolor |
Sobic.001G451500.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
349 |
1 |
349 |
0.0 |
102.3 |
92.8 |
97.7 |
| Subject |
357 |
1 |
357 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00002.1.g09820.1.sm.mkhc |
length: 349 aa. |
| IPR008146 |
Glutamine synthetase, catalytic domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004356 |
glutamate-ammonia ligase activity |
|
|
| Biological Process |
GO:0006807 |
nitrogen compound metabolic process |
|
|
| HMMPfam |
PF00120 |
Gln-synt_C |
2.2e-59 |
104-342 |
| IPR008147 |
Glutamine synthetase, beta-Grasp |
| Molecular Function |
GO:0004356 |
glutamate-ammonia ligase activity |
|
|
| Biological Process |
GO:0006542 |
glutamine biosynthetic process |
|
|
| Biological Process |
GO:0006807 |
nitrogen compound metabolic process |
|
|
| HMMPfam |
PF03951 |
Gln-synt_N |
1.5e-19 |
19-97 |
| superfamily |
SSF54368 |
Glutamine |
5.1e-19 |
3-103 |
| IPR014746 |
Glutamine synthetase/guanido kinase, catalytic domain |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Gene3D |
G3DSA:3.30.590.10 |
no description |
1.5e-55 |
121-340 |
| IPR027302 |
Glutamine synthetase, N-terminal conserved site |
| PatternScan |
PS00180 |
GLNA_1 |
NA |
55-72 |
| IPR027303 |
Glutamine synthetase, glycine-rich site |
| PatternScan |
PS00181 |
GLNA_ATP |
NA |
229-245 |
| no_ID |
|
| HMMPanther |
PTHR20852 |
GLUTAMINE |
5.8e-174 |
17-347 |
| HMMPanther |
PTHR20852:SF14 |
GLUTAMINE |
5.8e-174 |
17-347 |
| superfamily |
SSF55931 |
Glutamine |
7.2e-64 |
103-345 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 1 | 15604570 | 15607710 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00002.1 |
maker |
exon |
4670632 |
4671257 |
. |
+ |
. |
ID=Zjn_sc00002.1.g09820.1.sm.mkhc:exon:1 |
| Zjn_sc00002.1 |
maker |
exon |
4671411 |
4671450 |
. |
+ |
. |
ID=Zjn_sc00002.1.g09820.1.sm.mkhc:exon:2 |
| Zjn_sc00002.1 |
maker |
exon |
4671541 |
4671644 |
. |
+ |
. |
ID=Zjn_sc00002.1.g09820.1.sm.mkhc:exon:3 |
| Zjn_sc00002.1 |
maker |
exon |
4671749 |
4671797 |
. |
+ |
. |
ID=Zjn_sc00002.1.g09820.1.sm.mkhc:exon:4 |
| Zjn_sc00002.1 |
maker |
exon |
4672040 |
4672146 |
. |
+ |
. |
ID=Zjn_sc00002.1.g09820.1.sm.mkhc:exon:5 |
| Zjn_sc00002.1 |
maker |
exon |
4672440 |
4672503 |
. |
+ |
. |
ID=Zjn_sc00002.1.g09820.1.sm.mkhc:exon:6 |
| Zjn_sc00002.1 |
maker |
exon |
4672787 |
4672915 |
. |
+ |
. |
ID=Zjn_sc00002.1.g09820.1.sm.mkhc:exon:7 |
| Zjn_sc00002.1 |
maker |
exon |
4673023 |
4673097 |
. |
+ |
. |
ID=Zjn_sc00002.1.g09820.1.sm.mkhc:exon:8 |
| Zjn_sc00002.1 |
maker |
exon |
4673186 |
4673239 |
. |
+ |
. |
ID=Zjn_sc00002.1.g09820.1.sm.mkhc:exon:9 |
| Zjn_sc00002.1 |
maker |
exon |
4673315 |
4673512 |
. |
+ |
. |
ID=Zjn_sc00002.1.g09820.1.sm.mkhc:exon:10 |
| Zjn_sc00002.1 |
maker |
exon |
4673617 |
4673772 |
. |
+ |
. |
ID=Zjn_sc00002.1.g09820.1.sm.mkhc:exon:11 |