Z. japonica Nagirizaki
Zjn_sc00002.1.g09010.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G17330.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
494 |
1 |
494 |
0.0 |
101.6 |
84.8 |
91.5 |
| Subject |
502 |
1 |
502 |
|
| Annot |
| Symbols: GAD, GAD1 | glutamate decarboxylase | chr5:5711141-5714839 FORWARD LENGTH=502 |
| NR |
gb|EAY89173.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
494 |
1 |
494 |
0.0 |
99.6 |
94.5 |
97 |
| Subject |
492 |
1 |
492 |
|
| Annot |
hypothetical protein OsI_10669 [Oryza sativa Indica Group] |
| IRGSP |
Os03t0236200-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
494 |
1 |
494 |
0.0 |
99.6 |
94.1 |
96.8 |
| Subject |
492 |
1 |
492 |
|
| Annot |
|
| Sbicolor |
Sobic.001G443800.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
494 |
1 |
494 |
0.0 |
99.2 |
93.9 |
96.6 |
| Subject |
490 |
1 |
490 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00002.1.g09010.1.sm.mkhc |
length: 494 aa. |
| IPR002129 |
Pyridoxal phosphate-dependent decarboxylase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016831 |
carboxy-lyase activity |
|
|
| Biological Process |
GO:0019752 |
carboxylic acid metabolic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPfam |
PF00282 |
Pyridoxal_deC |
1.2e-103 |
35-383 |
| IPR010107 |
Glutamate decarboxylase |
| Molecular Function |
GO:0004351 |
glutamate decarboxylase activity |
|
|
| Biological Process |
GO:0006536 |
glutamate metabolic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPanther |
PTHR11999:SF1 |
GLUTAMATE |
0 |
9-494 |
| HMMTigr |
TIGR01788 |
Glu-decarb-GAD: |
3.6e-210 |
18-446 |
| IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.40.640.10 |
no description |
8.2e-29 |
77-313 |
| IPR015424 |
Pyridoxal phosphate-dependent transferase |
| superfamily |
SSF53383 |
PLP-dependent |
8.7e-129 |
5-450 |
| no_ID |
|
| HMMPanther |
PTHR11999 |
GROUP |
0 |
9-494 |
| Seg |
seg |
seg |
NA |
462-473 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 1 | 15250266 | 15252943 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00002.1 |
maker |
exon |
4316328 |
4317516 |
. |
- |
. |
ID=Zjn_sc00002.1.g09010.1.sm.mkhc:exon:4 |
| Zjn_sc00002.1 |
maker |
exon |
4317642 |
4317842 |
. |
- |
. |
ID=Zjn_sc00002.1.g09010.1.sm.mkhc:exon:3 |
| Zjn_sc00002.1 |
maker |
exon |
4318446 |
4318650 |
. |
- |
. |
ID=Zjn_sc00002.1.g09010.1.sm.mkhc:exon:2 |
| Zjn_sc00002.1 |
maker |
exon |
4318786 |
4319005 |
. |
- |
. |
ID=Zjn_sc00002.1.g09010.1.sm.mkhc:exon:1 |