Z. japonica Nagirizaki
Zjn_sc00002.1.g08480.1.am.mkhc
Sequence
-
BLAST
| TAIR10 |
AT3G59890.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
244 |
1 |
243 |
1e-99 |
143 |
67.6 |
86.5 |
| Subject |
349 |
86 |
328 |
|
| Annot |
| Symbols: | Dihydrodipicolinate reductase, bacterial/plant | chr3:22124497-22126491 REVERSE LENGTH=349 |
| NR |
ref|XP_002468183.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
244 |
1 |
244 |
e-128 |
133.6 |
88.5 |
96.3 |
| Subject |
326 |
63 |
306 |
|
| Annot |
hypothetical protein SORBIDRAFT_01g041240 [Sorghum bicolor] gi|241922037|gb|EER95181.1| hypothetical protein SORBIDRAFT_01g041240 [Sorghum bicolor] |
| IRGSP |
Os03t0245100-03_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
244 |
1 |
244 |
e-130 |
132.8 |
88.9 |
95.1 |
| Subject |
324 |
61 |
304 |
|
| Annot |
|
| Sbicolor |
Sobic.001G438600.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
244 |
1 |
244 |
e-131 |
133.6 |
88.5 |
96.3 |
| Subject |
326 |
63 |
306 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00002.1.g08480.1.am.mkhc |
length: 244 aa. |
| IPR000846 |
Dihydrodipicolinate reductase, N-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0008839 |
4-hydroxy-tetrahydrodipicolinate reductase |
|
|
| Biological Process |
GO:0009089 |
lysine biosynthetic process via diaminopimelate |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| HMMPfam |
PF01113 |
DapB_N |
8.3e-09 |
1-101 |
| IPR011770 |
Dihydrodipicolinate reductase, bacterial/plant |
| Molecular Function |
GO:0008839 |
4-hydroxy-tetrahydrodipicolinate reductase |
|
|
| Biological Process |
GO:0009089 |
lysine biosynthetic process via diaminopimelate |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| Molecular Function |
GO:0070402 |
NADPH binding |
|
|
| HMMPanther |
PTHR20836 |
DIHYDRODIPICOLINATE |
6.8e-64 |
1-243 |
| IPR011859 |
Dihydrodipicolinate reductase, plant |
| Molecular Function |
GO:0008839 |
4-hydroxy-tetrahydrodipicolinate reductase |
|
|
| Biological Process |
GO:0009089 |
lysine biosynthetic process via diaminopimelate |
|
|
| Cellular Component |
GO:0009507 |
chloroplast |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| Molecular Function |
GO:0070402 |
NADPH binding |
|
|
| HMMTigr |
TIGR02130 |
dapB_plant: |
4.8e-114 |
1-243 |
| IPR016040 |
NAD(P)-binding domain |
| Gene3D |
G3DSA:3.40.50.720 |
no description |
7.5e-23 |
1-154 |
| IPR022663 |
Dihydrodipicolinate reductase, C-terminal |
| Molecular Function |
GO:0008839 |
4-hydroxy-tetrahydrodipicolinate reductase |
|
|
| Biological Process |
GO:0009089 |
lysine biosynthetic process via diaminopimelate |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| HMMPfam |
PF05173 |
DapB_C |
1.3e-06 |
125-241 |
| no_ID |
|
| HMMPanther |
PTHR20836:SF0 |
SUBFAMILY |
6.8e-64 |
1-243 |
| superfamily |
SSF51735 |
NAD(P)-binding |
1.3e-08 |
61-242 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 1 | 15041096 | 15044633 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00002.1 |
maker |
exon |
4107158 |
4107726 |
. |
- |
. |
ID=Zjn_sc00002.1.g08480.1.am.mkhc:exon:6 |
| Zjn_sc00002.1 |
maker |
exon |
4107831 |
4107940 |
. |
- |
. |
ID=Zjn_sc00002.1.g08480.1.am.mkhc:exon:5 |
| Zjn_sc00002.1 |
maker |
exon |
4108772 |
4108873 |
. |
- |
. |
ID=Zjn_sc00002.1.g08480.1.am.mkhc:exon:4 |
| Zjn_sc00002.1 |
maker |
exon |
4109143 |
4109217 |
. |
- |
. |
ID=Zjn_sc00002.1.g08480.1.am.mkhc:exon:3 |
| Zjn_sc00002.1 |
maker |
exon |
4109325 |
4109458 |
. |
- |
. |
ID=Zjn_sc00002.1.g08480.1.am.mkhc:exon:2 |
| Zjn_sc00002.1 |
maker |
exon |
4110111 |
4110695 |
. |
- |
. |
ID=Zjn_sc00002.1.g08480.1.am.mkhc:exon:1 |