Z. japonica Nagirizaki
Zjn_sc00002.1.g07900.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT4G36480.2 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
304 |
100 |
296 |
5e-72 |
158.6 |
44.4 |
54.9 |
| Subject |
482 |
198 |
426 |
|
| Annot |
| Symbols: ATLCB1, LCB1, EMB2779, FBR11 | long-chain base1 | chr4:17218598-17221124 FORWARD LENGTH=482 |
| NR |
gb|EEE50683.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
304 |
3 |
299 |
e-128 |
130.6 |
80.6 |
88.2 |
| Subject |
397 |
1 |
347 |
|
| Annot |
hypothetical protein OsJ_30932 [Oryza sativa Japonica Group] |
| IRGSP |
Os03t0252800-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
304 |
97 |
295 |
2e-96 |
159.5 |
57.6 |
63.5 |
| Subject |
485 |
197 |
427 |
|
| Annot |
|
| Sbicolor |
Sobic.001G434900.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
304 |
97 |
295 |
e-100 |
159.5 |
59.9 |
64.1 |
| Subject |
485 |
197 |
427 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00002.1.g07900.1.sm.mkhc |
length: 304 aa. |
| IPR004839 |
Aminotransferase, class I/classII |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0009058 |
biosynthetic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPfam |
PF00155 |
Aminotran_1_2 |
5.8e-12 |
101-194 |
| IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.40.640.10 |
no description |
2.9e-35 |
100-204 |
| IPR015422 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.90.1150.10 |
no description |
9e-07 |
206-277 |
| IPR015424 |
Pyridoxal phosphate-dependent transferase |
| superfamily |
SSF53383 |
PLP-dependent |
6.3e-30 |
100-277 |
| no_ID |
|
| HMMPanther |
PTHR13693 |
CLASS |
6.4e-89 |
101-296 |
| HMMPanther |
PTHR13693:SF2 |
SERINE |
6.4e-89 |
101-296 |
| Seg |
seg |
seg |
NA |
4-24 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 1 | 14833395 | 14837835 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00002.1 |
maker |
exon |
3899457 |
3899568 |
. |
+ |
. |
ID=Zjn_sc00002.1.g07900.1.sm.mkhc:exon:1 |
| Zjn_sc00002.1 |
maker |
exon |
3899658 |
3899752 |
. |
+ |
. |
ID=Zjn_sc00002.1.g07900.1.sm.mkhc:exon:2 |
| Zjn_sc00002.1 |
maker |
exon |
3899864 |
3899955 |
. |
+ |
. |
ID=Zjn_sc00002.1.g07900.1.sm.mkhc:exon:3 |
| Zjn_sc00002.1 |
maker |
exon |
3901526 |
3901700 |
. |
+ |
. |
ID=Zjn_sc00002.1.g07900.1.sm.mkhc:exon:4 |
| Zjn_sc00002.1 |
maker |
exon |
3901878 |
3902018 |
. |
+ |
. |
ID=Zjn_sc00002.1.g07900.1.sm.mkhc:exon:5 |
| Zjn_sc00002.1 |
maker |
exon |
3902319 |
3902460 |
. |
+ |
. |
ID=Zjn_sc00002.1.g07900.1.sm.mkhc:exon:6 |
| Zjn_sc00002.1 |
maker |
exon |
3902767 |
3902894 |
. |
+ |
. |
ID=Zjn_sc00002.1.g07900.1.sm.mkhc:exon:7 |
| Zjn_sc00002.1 |
maker |
exon |
3903868 |
3903897 |
. |
+ |
. |
ID=Zjn_sc00002.1.g07900.1.sm.mkhc:exon:8 |