Z. japonica Nagirizaki
Zjn_sc00002.1.g07760.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G80490.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 796 1 557 0.0 140.7 56.8 63.1
Subject 1120 1 695
Annot | Symbols: TPR1 | TOPLESS-related 1 | chr1:30261094-30266446 REVERSE LENGTH=1120
NR ref|XP_002465540.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 796 1 559 0.0 141.3 67.6 69.2
Subject 1125 1 692
Annot hypothetical protein SORBIDRAFT_01g040800 [Sorghum bicolor] gi|241919394|gb|EER92538.1| hypothetical protein SORBIDRAFT_01g040800 [Sorghum bicolor]
IRGSP Os03t0254700-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 796 1 559 0.0 142.3 67.1 68.6
Subject 1133 1 692
Annot
Sbicolor Sobic.001G433800.2.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 796 1 559 0.0 141.3 67.6 69.2
Subject 1125 1 692
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00002.1.g07760.1.am.mkhc length: 796 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 3.4e-06 353-383
662-699
HMMSmart SM00320 WD40 1.9e-05 287-326
343-386
401-444
447-487
577-614
617-657
660-699
ProfileScan PS50082 WD_REPEATS_2 12.346 667-708
IPR006594 LisH dimerisation motif
Molecular Function GO:0005515 protein binding    
HMMSmart SM00667 Lissencephaly 5.2e-05 4-36
ProfileScan PS50896 LISH 10.212 4-36
IPR006595 CTLH, C-terminal LisH motif
HMMSmart SM00668 C-terminal 1.9e-12 34-92
ProfileScan PS50897 CTLH 12.865 34-92
IPR011047 Quinonprotein alcohol dehydrogenase-like superfamily
superfamily SSF50998 Quinoprotein 8.8e-09 289-400
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2.3e-26 297-521
584-758
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 15.136 455-708
superfamily SSF50978 WD40 2.2e-40 391-699
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 686-700
IPR027728 Topless family
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPanther PTHR22847:SF106SUBFAMILY NOT 4.8e-163 95-781
no_ID  
HMMPanther PTHR22847 WD40 4.8e-163 95-781
Seg seg seg NA 615-636
726-740
Pseudomolecule
Chromosome Start End Strand
11475435914764105+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00002.1 maker exon 3820421 3820474 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:1
Zjn_sc00002.1 maker exon 3821259 3821403 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:2
Zjn_sc00002.1 maker exon 3821488 3821667 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:3
Zjn_sc00002.1 maker exon 3821760 3821873 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:4
Zjn_sc00002.1 maker exon 3823569 3823746 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:5
Zjn_sc00002.1 maker exon 3823830 3823950 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:6
Zjn_sc00002.1 maker exon 3824049 3824164 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:7
Zjn_sc00002.1 maker exon 3824285 3824438 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:8
Zjn_sc00002.1 maker exon 3824540 3824649 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:9
Zjn_sc00002.1 maker exon 3825065 3825160 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:10
Zjn_sc00002.1 maker exon 3825455 3825582 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:11
Zjn_sc00002.1 maker exon 3825664 3825898 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:12
Zjn_sc00002.1 maker exon 3826000 3826164 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:13
Zjn_sc00002.1 maker exon 3827260 3827439 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:14
Zjn_sc00002.1 maker exon 3827515 3827643 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:15
Zjn_sc00002.1 maker exon 3827732 3827827 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:16
Zjn_sc00002.1 maker exon 3827916 3828013 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:17
Zjn_sc00002.1 maker exon 3828886 3829158 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:18
Zjn_sc00002.1 maker exon 3829312 3830167 . + . ID=Zjn_sc00002.1.g07760.1.am.mkhc:exon:19

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