Z. japonica Nagirizaki
Zjn_sc00002.1.g07750.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G48850.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 440 40 424 e-180 99.1 66.4 76.8
Subject 436 39 423
Annot | Symbols: EMB1144 | chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative | chr1:18065154-18067956 REVERSE LENGTH=436
NR ref|XP_002465539.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 440 1 440 0.0 100 92.5 96.8
Subject 440 1 440
Annot hypothetical protein SORBIDRAFT_01g040790 [Sorghum bicolor] gi|241919393|gb|EER92537.1| hypothetical protein SORBIDRAFT_01g040790 [Sorghum bicolor]
IRGSP Os03t0254800-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 440 1 440 0.0 99.5 89.3 93.4
Subject 438 1 438
Annot
Sbicolor Sobic.001G433700.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 440 1 440 0.0 100 92.5 96.8
Subject 440 1 440
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00002.1.g07750.1.sm.mkhc length: 440 aa.
IPR000453 Chorismate synthase
method AccNumber shortName E-value location
Molecular Function GO:0004107 chorismate synthase activity    
Biological Process GO:0009073 aromatic amino acid family biosynthetic process    
Gene3D G3DSA:3.60.150.10 no description 2.8e-160 59-428
HAMAP MF_00300 Chorismate_synth 35.033 60-414
HMMPIR PIRSF001456 Chorismate 1.2e-201 51-421
HMMPanther PTHR21085 CHORISMATE 3e-194 52-436
HMMPfam PF01264 Chorismate_synt 4.7e-139 60-407
HMMTigr TIGR00033 aroC: 5.3e-138 60-411
superfamily SSF103263 Chorismate 1e-141 53-422
IPR020541 Chorismate synthase, conserved site
Molecular Function GO:0004107 chorismate synthase activity    
Biological Process GO:0009073 aromatic amino acid family biosynthetic process    
PatternScan PS00787 CHORISMATE_SYNTHASE_1 NA 66-81
PatternScan PS00788 CHORISMATE_SYNTHASE_2 NA 174-190
PatternScan PS00789 CHORISMATE_SYNTHASE_3 NA 381-397
no_ID  
Seg seg seg NA 40-46
186-198
Pseudomolecule
Chromosome Start End Strand
11474921414753388+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00002.1 maker exon 3815276 3815614 . + . ID=Zjn_sc00002.1.g07750.1.sm.mkhc:exon:1
Zjn_sc00002.1 maker exon 3816158 3816308 . + . ID=Zjn_sc00002.1.g07750.1.sm.mkhc:exon:2
Zjn_sc00002.1 maker exon 3816526 3816602 . + . ID=Zjn_sc00002.1.g07750.1.sm.mkhc:exon:3
Zjn_sc00002.1 maker exon 3816707 3816765 . + . ID=Zjn_sc00002.1.g07750.1.sm.mkhc:exon:4
Zjn_sc00002.1 maker exon 3816872 3816955 . + . ID=Zjn_sc00002.1.g07750.1.sm.mkhc:exon:5
Zjn_sc00002.1 maker exon 3817063 3817155 . + . ID=Zjn_sc00002.1.g07750.1.sm.mkhc:exon:6
Zjn_sc00002.1 maker exon 3817637 3817717 . + . ID=Zjn_sc00002.1.g07750.1.sm.mkhc:exon:7
Zjn_sc00002.1 maker exon 3817817 3817948 . + . ID=Zjn_sc00002.1.g07750.1.sm.mkhc:exon:8
Zjn_sc00002.1 maker exon 3818053 3818155 . + . ID=Zjn_sc00002.1.g07750.1.sm.mkhc:exon:9
Zjn_sc00002.1 maker exon 3818266 3818360 . + . ID=Zjn_sc00002.1.g07750.1.sm.mkhc:exon:10
Zjn_sc00002.1 maker exon 3818454 3818519 . + . ID=Zjn_sc00002.1.g07750.1.sm.mkhc:exon:11
Zjn_sc00002.1 maker exon 3818855 3818939 . + . ID=Zjn_sc00002.1.g07750.1.sm.mkhc:exon:12
Zjn_sc00002.1 maker exon 3819024 3819450 . + . ID=Zjn_sc00002.1.g07750.1.sm.mkhc:exon:13

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