Z. japonica Nagirizaki
Zjn_sc00002.1.g07220.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G21910.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 239 38 143 6e-29 96.2 27.6 31
Subject 230 50 142
Annot | Symbols: DREB26 | Integrase-type DNA-binding superfamily protein | chr1:7696655-7697347 FORWARD LENGTH=230
NR ref|XP_002465511.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 239 1 239 6e-64 102.9 68.6 75.7
Subject 246 1 246
Annot hypothetical protein SORBIDRAFT_01g040280 [Sorghum bicolor] gi|241919365|gb|EER92509.1| hypothetical protein SORBIDRAFT_01g040280 [Sorghum bicolor]
IRGSP Os03t0263000-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 239 35 239 6e-46 107.9 57.7 64.4
Subject 258 47 258
Annot
Sbicolor Sobic.001G428700.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 239 1 239 8e-67 102.9 68.6 75.7
Subject 246 1 246
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00002.1.g07220.1.am.mk length: 239 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 5.4e-08 38-49
60-76
Gene3D G3DSA:3.30.730.10 no description 1.2e-28 36-96
HMMPfam PF00847 AP2 5e-16 37-86
HMMSmart SM00380 DNA-binding 6.6e-36 37-100
ProfileScan PS51032 AP2_ERF 22.181 37-94
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 3.1e-21 36-97
no_ID  
HMMPanther PTHR31985 FAMILY 3.4e-27 38-141
Seg seg seg NA 68-80
94-107
134-140
151-167
174-189
Pseudomolecule
Chromosome Start End Strand
11453304514533764+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00002.1 maker_non_over exon 3599107 3599826 . + . ID=Zjn_sc00002.1.g07220.1.am.mk:exon:1

Top