Z. japonica Nagirizaki
Zjn_sc00002.1.g05230.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G05580.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 560 164 555 e-175 77.7 51.3 57.3
Subject 435 57 431
Annot | Symbols: FAD8 | fatty acid desaturase 8 | chr5:1664331-1666345 FORWARD LENGTH=435
NR ref|XP_004984851.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 560 154 555 0.0 77.7 65.2 67.3
Subject 435 40 435
Annot PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Setaria italica]
IRGSP Os07t0693800-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 560 168 551 e-172 73.8 53 59.1
Subject 413 35 410
Annot
Sbicolor Sobic.001G407600.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 560 157 560 0.0 80.5 66.1 68.9
Subject 451 46 449
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00002.1.g05230.1.sm.mkhc length: 560 aa.
IPR005804 Fatty acid desaturase, type 1
method AccNumber shortName E-value location
Biological Process GO:0006629 lipid metabolic process    
HMMPfam PF00487 FA_desaturase 5.8e-37 257-512
IPR021863 Protein of unknown function DUF3474
Molecular Function GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF11960 DUF3474 4.5e-39 128-250
no_ID  
HMMPanther PTHR32100 FAMILY 6e-243 171-560
HMMPanther PTHR32100:SF0 SUBFAMILY 6e-243 171-560
Seg seg seg NA 142-155
238-256
355-367
Pseudomolecule
Chromosome Start End Strand
11368868513693179+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00002.1 maker exon 2754747 2754815 . + . ID=Zjn_sc00002.1.g05230.1.sm.mkhc:exon:1
Zjn_sc00002.1 maker exon 2754968 2755365 . + . ID=Zjn_sc00002.1.g05230.1.sm.mkhc:exon:2
Zjn_sc00002.1 maker exon 2756136 2756513 . + . ID=Zjn_sc00002.1.g05230.1.sm.mkhc:exon:3
Zjn_sc00002.1 maker exon 2756628 2756717 . + . ID=Zjn_sc00002.1.g05230.1.sm.mkhc:exon:4
Zjn_sc00002.1 maker exon 2756814 2756880 . + . ID=Zjn_sc00002.1.g05230.1.sm.mkhc:exon:5
Zjn_sc00002.1 maker exon 2756998 2757090 . + . ID=Zjn_sc00002.1.g05230.1.sm.mkhc:exon:6
Zjn_sc00002.1 maker exon 2757204 2757389 . + . ID=Zjn_sc00002.1.g05230.1.sm.mkhc:exon:7
Zjn_sc00002.1 maker exon 2757499 2757579 . + . ID=Zjn_sc00002.1.g05230.1.sm.mkhc:exon:8
Zjn_sc00002.1 maker exon 2758311 2758448 . + . ID=Zjn_sc00002.1.g05230.1.sm.mkhc:exon:9
Zjn_sc00002.1 maker exon 2758533 2759241 . + . ID=Zjn_sc00002.1.g05230.1.sm.mkhc:exon:10

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