Z. japonica Nagirizaki
Zjn_sc00002.1.g04540.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
No_hits |
| NR |
ref|XP_004987036.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
369 |
3 |
368 |
e-113 |
116.5 |
58 |
70.5 |
| Subject |
430 |
10 |
378 |
|
| Annot |
PREDICTED: F-box protein At5g49610-like [Setaria italica] |
| IRGSP |
Os12t0128000-01_chr12_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
369 |
13 |
365 |
4e-47 |
108.1 |
34.7 |
48 |
| Subject |
399 |
20 |
344 |
|
| Annot |
|
| Sbicolor |
Sobic.008G163100.1.p|Chr08|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
369 |
1 |
369 |
5e-81 |
121.1 |
47.7 |
64.5 |
| Subject |
447 |
1 |
388 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00002.1.g04540.1.sm.mk |
length: 369 aa. |
| IPR001810 |
F-box domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
6.2e-05 |
17-43 |
| ProfileScan |
PS50181 |
FBOX |
8.597 |
10-59 |
| superfamily |
SSF81383 |
F-box |
1.8e-09 |
3-69 |
| IPR013187 |
F-box associated domain, type 3 |
| HMMPfam |
PF08268 |
FBA_3 |
1.8e-05 |
265-360 |
| IPR017451 |
F-box associated interaction domain |
| HMMTigr |
TIGR01640 |
F_box_assoc_1: |
2.3e-13 |
149-362 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
0.00015 |
17-51 |
| Seg |
seg |
seg |
NA |
128-137 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 1 | 13412375 | 13414043 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00002.1 |
maker_non_over |
exon |
2478437 |
2479537 |
. |
+ |
. |
ID=Zjn_sc00002.1.g04540.1.sm.mk:exon:1 |
| Zjn_sc00002.1 |
maker_non_over |
exon |
2480097 |
2480105 |
. |
+ |
. |
ID=Zjn_sc00002.1.g04540.1.sm.mk:exon:2 |