Z. japonica Nagirizaki
Zjn_sc00002.1.g04470.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 No_hits
NR ref|XP_004987036.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 834 3 306 2e-87 51.6 21.5 25.7
Subject 430 8 319
Annot PREDICTED: F-box protein At5g49610-like [Setaria italica]
IRGSP Os12t0128000-01_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 834 17 306 6e-43 47.8 14 18.9
Subject 399 24 287
Annot
Sbicolor Sobic.008G163100.1.p|Chr08|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 834 1 278 6e-51 53.6 14.7 20.1
Subject 447 1 301
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00002.1.g04470.1.am.mk length: 834 aa.
IPR001810 F-box domain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00646 F-box 2e-07 19-52
535-570
HMMSmart SM00256 A 2.8e-05 16-56
534-574
ProfileScan PS50181 FBOX 9.286 10-56
528-578
superfamily SSF81383 F-box 0.012 521-587
3-48
369-399
no_ID  
Gene3D G3DSA:1.20.1280.50 no description 1.9e-05 17-48
535-567
Seg seg seg NA 2-13
302-314
626-645
Pseudomolecule
Chromosome Start End Strand
11337591713382707-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00002.1 maker_non_over exon 2441979 2442072 . - . ID=Zjn_sc00002.1.g04470.1.am.mk:exon:6
Zjn_sc00002.1 maker_non_over exon 2442157 2442236 . - . ID=Zjn_sc00002.1.g04470.1.am.mk:exon:5
Zjn_sc00002.1 maker_non_over exon 2442474 2443471 . - . ID=Zjn_sc00002.1.g04470.1.am.mk:exon:4
Zjn_sc00002.1 maker_non_over exon 2445683 2445940 . - . ID=Zjn_sc00002.1.g04470.1.am.mk:exon:3
Zjn_sc00002.1 maker_non_over exon 2446079 2446258 . - . ID=Zjn_sc00002.1.g04470.1.am.mk:exon:2
Zjn_sc00002.1 maker_non_over exon 2447875 2448769 . - . ID=Zjn_sc00002.1.g04470.1.am.mk:exon:1

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