Z. japonica Nagirizaki
Zjn_sc00002.1.g01890.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G50950.3 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 319 142 319 2e-68 132.6 48 51.4
Subject 423 132 423
Annot | Symbols: FUM2 | FUMARASE 2 | chr5:20729999-20733636 FORWARD LENGTH=423
NR gb|KHG29130.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 319 1 319 e-122 144.5 82.1 88.1
Subject 461 3 461
Annot Fumarate hydratase 1, mitochondrial -like protein [Gossypium arboreum]
IRGSP Os03t0337900-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 319 142 319 1e-67 157.4 51.4 53.6
Subject 502 211 502
Annot
Sbicolor Sobic.001G378800.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 319 1 145 7e-69 156.1 41.4 42.6
Subject 498 1 145
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00002.1.g01890.1.sm.mkhc length: 319 aa.
IPR008948 L-Aspartase-like
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
superfamily SSF48557 L-aspartase-like 2.4e-73 37-315
IPR018951 Fumarase C, C-terminal
Biological Process GO:0006099 tricarboxylic acid cycle    
Molecular Function GO:0016829 lyase activity    
HMMPfam PF10415 FumaraseC_C 7e-19 267-317
IPR022761 Fumarate lyase, N-terminal
HMMPfam PF00206 Lyase_1 1.4e-05 46-145
144-178
177-220
IPR024083 Fumarase/histidase, N-terminal
Gene3D G3DSA:1.10.275.10 no description 4.4e-46 37-144
no_ID  
Gene3D G3DSA:1.10.40.30 no description 3.4e-22 270-318
Gene3D G3DSA:1.20.200.10 no description 4.4e-15 145-220
221-269
HMMPanther PTHR11444 ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE 3.2e-130 36-319
HMMPanther PTHR11444:SF1 ASPARTATE 3.2e-130 36-319
Seg seg seg NA 4-30
Pseudomolecule
Chromosome Start End Strand
11212158412128153-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00002.1 maker exon 1187646 1187971 . - . ID=Zjn_sc00002.1.g01890.1.sm.mkhc:exon:11
Zjn_sc00002.1 maker exon 1187992 1188088 . - . ID=Zjn_sc00002.1.g01890.1.sm.mkhc:exon:10
Zjn_sc00002.1 maker exon 1188394 1188459 . - . ID=Zjn_sc00002.1.g01890.1.sm.mkhc:exon:9
Zjn_sc00002.1 maker exon 1188905 1189000 . - . ID=Zjn_sc00002.1.g01890.1.sm.mkhc:exon:8
Zjn_sc00002.1 maker exon 1189568 1189618 . - . ID=Zjn_sc00002.1.g01890.1.sm.mkhc:exon:7
Zjn_sc00002.1 maker exon 1190166 1190247 . - . ID=Zjn_sc00002.1.g01890.1.sm.mkhc:exon:6
Zjn_sc00002.1 maker exon 1191284 1191333 . - . ID=Zjn_sc00002.1.g01890.1.sm.mkhc:exon:5
Zjn_sc00002.1 maker exon 1191548 1191646 . - . ID=Zjn_sc00002.1.g01890.1.sm.mkhc:exon:4
Zjn_sc00002.1 maker exon 1193239 1193388 . - . ID=Zjn_sc00002.1.g01890.1.sm.mkhc:exon:3
Zjn_sc00002.1 maker exon 1193790 1193907 . - . ID=Zjn_sc00002.1.g01890.1.sm.mkhc:exon:2
Zjn_sc00002.1 maker exon 1194055 1194215 . - . ID=Zjn_sc00002.1.g01890.1.sm.mkhc:exon:1

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