Z. japonica Nagirizaki
Zjn_sc00002.1.g01100.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G19390.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 765 30 762 0.0 113.7 57.3 70.8
Subject 870 58 870
Annot | Symbols: | Rho GTPase activation protein (RhoGAP) with PH domain | chr5:6531906-6538206 FORWARD LENGTH=870
NR ref|XP_012698357.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 765 1 765 0.0 114.1 88.5 94.1
Subject 873 1 873
Annot PREDICTED: rho GTPase-activating protein 7-like isoform X1 [Setaria italica]
IRGSP Os03t0356638-00_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 765 1 765 0.0 109.8 83.5 89.8
Subject 840 1 840
Annot
Sbicolor Sobic.001G367100.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 765 1 765 0.0 114.5 88.4 94
Subject 876 1 872
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00002.1.g01100.1.sm.mkhc length: 765 aa.
IPR000198 Rho GTPase-activating protein domain
method AccNumber shortName E-value location
Biological Process GO:0007165 signal transduction    
Gene3D G3DSA:1.10.555.10 no description 7.5e-09 130-207
231-314
HMMSmart SM00324 GTPase-activator 0.0003 150-307
IPR001849 Pleckstrin homology domain
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0005543 phospholipid binding    
ProfileScan PS50003 PH_DOMAIN 7.354 1-97
IPR008936 Rho GTPase activation protein
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007165 signal transduction    
superfamily SSF48350 GTPase 3.2e-17 146-313
IPR011993 Pleckstrin homology-like domain
Gene3D G3DSA:2.30.29.30 no description 9e-05 40-101
IPR025757 Ternary complex factor MIP1, leucine-zipper
HMMPfam PF14389 Lzipper-MIP1 3.7e-19 509-595
no_ID  
Coil coil coiled-coil NA 472-500
504-539
563-598
718-739
HMMPanther PTHR23176 RHO/RAC/CDC 1.7e-47 29-535
Seg seg seg NA 17-26
270-296
565-575
587-598
674-686
Pseudomolecule
Chromosome Start End Strand
11169609711706297+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00002.1 maker exon 762159 762242 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:1
Zjn_sc00002.1 maker exon 764856 764926 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:2
Zjn_sc00002.1 maker exon 765018 765096 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:3
Zjn_sc00002.1 maker exon 765206 765350 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:4
Zjn_sc00002.1 maker exon 765436 765555 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:5
Zjn_sc00002.1 maker exon 765643 765720 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:6
Zjn_sc00002.1 maker exon 765794 765835 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:7
Zjn_sc00002.1 maker exon 765957 766026 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:8
Zjn_sc00002.1 maker exon 766343 766586 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:9
Zjn_sc00002.1 maker exon 766783 766905 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:10
Zjn_sc00002.1 maker exon 768018 768338 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:11
Zjn_sc00002.1 maker exon 768508 768557 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:12
Zjn_sc00002.1 maker exon 768967 769027 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:13
Zjn_sc00002.1 maker exon 769105 769188 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:14
Zjn_sc00002.1 maker exon 769848 769961 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:15
Zjn_sc00002.1 maker exon 770050 770216 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:16
Zjn_sc00002.1 maker exon 771007 771073 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:17
Zjn_sc00002.1 maker exon 771575 771763 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:18
Zjn_sc00002.1 maker exon 771840 772359 . + . ID=Zjn_sc00002.1.g01100.1.sm.mkhc:exon:19

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