Z. japonica Nagirizaki
Zjn_sc00002.1.g00530.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT5G49610.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
414 |
16 |
307 |
2e-13 |
86.7 |
19.3 |
31.9 |
| Subject |
359 |
6 |
284 |
|
| Annot |
| Symbols: | F-box family protein | chr5:20131448-20132527 REVERSE LENGTH=359 |
| NR |
gb|EAY93154.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
414 |
17 |
414 |
4e-83 |
94.4 |
45.4 |
58.7 |
| Subject |
391 |
19 |
391 |
|
| Annot |
hypothetical protein OsI_14960 [Oryza sativa Indica Group] |
| IRGSP |
Os04t0195100-01_chr04_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
414 |
7 |
414 |
1e-61 |
92.3 |
39.6 |
51.4 |
| Subject |
382 |
4 |
382 |
|
| Annot |
|
| Sbicolor |
Sobic.010G196800.1.p|Chr10|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
414 |
4 |
414 |
7e-46 |
100 |
36 |
51.2 |
| Subject |
414 |
7 |
414 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00002.1.g00530.1.sm.mk |
length: 414 aa. |
| IPR001810 |
F-box domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
2.9e-06 |
20-52 |
| superfamily |
SSF81383 |
F-box |
1.7e-08 |
19-73 |
| IPR017451 |
F-box associated interaction domain |
| HMMTigr |
TIGR01640 |
F_box_assoc_1: |
2.7e-15 |
125-325 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
3.5e-06 |
14-54 |
| Seg |
seg |
seg |
NA |
39-50 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 1 | 11298304 | 11299548 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00002.1 |
maker_non_over |
exon |
364366 |
365610 |
. |
- |
. |
ID=Zjn_sc00002.1.g00530.1.sm.mk:exon:1 |