Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00002.1.g00130.1.sm.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00002.1)

BLAST

TAIR10	AT5G62470.2		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	329	45	199	1e-69	107	35.3	41.9
		Subject	352	1	171
		Annot	\| Symbols: MYB96 \| myb domain protein 96 \| chr5:25079434-25080858 REVERSE LENGTH=352
NR	ref\|NP_001149309.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	329	45	327	5e-81	96.7	61.4	68.1
		Subject	318	1	318
		Annot	myb transcription factor MYB30 [Zea mays] gi\|670436022\|ref\|XP_008658625.1\| PREDICTED: myb transcription factor MYB30 isoform X1 [Zea mays] gi\|195626272\|gb\|ACG34966.1\| myb transcription factor MYB30 [Zea mays] gi\|413955329\|gb\|AFW87978.1\| putative MYB DNA-binding domain superfamily protein [Zea mays] gi\|645165865\|gb\|AIB04685.1\| MYB transcription factor, partial [synthetic construct]
IRGSP	Os08t0437300-00_chr08_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	329	45	241	1e-72	79.6	40.1	48
		Subject	262	1	210
		Annot
Sbicolor	Sobic.001G356000.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	329	45	327	8e-89	97	59.9	65.3
		Subject	319	1	319
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR001005	SANT/Myb domain
Zjn_sc00002.1.g00130.1.sm.mk				length: 329 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003682	chromatin binding
HMMPfam	PF00249	Myb_DNA-binding	7.3e-12	58-105 111-156
HMMSmart	SM00717	SANT	5.9e-15	57-107 110-158
IPR009057	Homeodomain-like
Molecular Function	GO:0003677	DNA binding
Gene3D	G3DSA:1.10.10.60	no description	1.4e-21	49-108 109-160
superfamily	SSF46689	Homeodomain-like	2e-26	58-157
IPR017930	Myb domain
ProfileScan	PS51294	HTH_MYB	19.043	53-109 110-160
no_ID
HMMPanther	PTHR10641	MYB-LIKE	1.7e-83	45-226
HMMPanther	PTHR10641:SF30	MYB	1.7e-83	45-226
Seg	seg	seg	NA	164-169 203-213 262-277

Pseudomolecule

Chromosome	Start	End	Strand
1	11071647	11072636	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00002.1	maker_non_over	exon	137709	138698	.	-	.	ID=Zjn_sc00002.1.g00130.1.sm.mk:exon:1