Z. japonica Nagirizaki
Zjn_sc00001.1.g12390.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G23240.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 232 66 219 6e-33 94 33.6 40.9
Subject 218 78 213
Annot | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218
NR ref|XP_003571392.2| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 232 69 219 1e-41 80.2 45.3 52.2
Subject 186 27 175
Annot PREDICTED: ethylene-responsive transcription factor 15-like [Brachypodium distachyon]
IRGSP Os07t0410700-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 232 30 221 3e-39 103 55.2 62.9
Subject 239 35 232
Annot
Sbicolor Sobic.002G115400.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 232 30 219 2e-42 108.6 59.9 66.4
Subject 252 44 251
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00001.1.g12390.1.am.mk length: 232 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 3.4e-08 70-81
93-109
Gene3D G3DSA:3.30.730.10 no description 8.2e-27 70-128
HMMPfam PF00847 AP2 5.4e-15 70-119
HMMSmart SM00380 DNA-binding 5.1e-31 69-133
ProfileScan PS51032 AP2_ERF 21.931 69-127
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 7.8e-23 68-130
no_ID  
HMMPanther PTHR31190 FAMILY 8.5e-17 30-133
HMMPanther PTHR31190:SF0 SUBFAMILY 8.5e-17 30-133
Seg seg seg NA 22-29
42-65
103-117
137-148
155-176
Pseudomolecule
Chromosome Start End Strand
436476933648391-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00001.1 maker_non_over exon 7648933 7649631 . + . ID=Zjn_sc00001.1.g12390.1.am.mk:exon:1

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