Z. japonica Nagirizaki
Zjn_sc00001.1.g12030.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G64740.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1103 1 1102 0.0 98.3 69.9 81.6
Subject 1084 1 1083
Annot | Symbols: CESA6, IXR2, E112, PRC1 | cellulose synthase 6 | chr5:25881555-25886333 FORWARD LENGTH=1084
NR ref|NP_001051830.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1103 1 1103 0.0 99 92.6 95.3
Subject 1092 1 1092
Annot Os03g0837100 [Oryza sativa Japonica Group] gi|75328327|sp|Q851L8.1|CESA5_ORYSJ RecName: Full=Probable cellulose synthase A catalytic subunit 5 [UDP-forming]; AltName: Full=OsCesA5 gi|171769909|sp|A2XNT2.1|CESA5_ORYSI RecName: Full=Probable cellulose synthase A catalytic subunit 5 [UDP-forming]; AltName: Full=OsCesA5 gi|28376710|gb|AAO41140.1| cellulose synthase [Oryza sativa Japonica Group] gi|108711976|gb|ABF99771.1| Cellulose synthase A catalytic subunit 6, putative, expressed [Oryza sativa Japonica Group] gi|113550301|dbj|BAF13744.1| Os03g0837100 [Oryza sativa Japonica Group] gi|125546353|gb|EAY92492.1| hypothetical protein OsI_14229 [Oryza sativa Indica Group] gi|125588555|gb|EAZ29219.1| hypothetical protein OsJ_13280 [Oryza sativa Japonica Group]
IRGSP Os03t0837100-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1103 1 1103 0.0 99 92.6 95.3
Subject 1092 1 1092
Annot
Sbicolor Sobic.002G118700.2.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1103 1 1103 0.0 98.5 93.3 95.3
Subject 1087 1 1087
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00001.1.g12030.1.sm.mkhc length: 1103 aa.
IPR005150 Cellulose synthase
method AccNumber shortName E-value location
Cellular Component GO:0016020 membrane    
Molecular Function GO:0016760 cellulose synthase (UDP-forming) activity    
Biological Process GO:0030244 cellulose biosynthetic process    
HMMPfam PF03552 Cellulose_synt 0 368-1095
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 3.8e-33 42-129
IPR027934 Cellulose synthase, RING-type zinc finger
HMMPfam PF14569 zf-UDP 3.1e-38 44-123
no_ID  
Coil coil coiled-coil NA 466-487
HMMPanther PTHR13301 X-BOX 0 16-1102
HMMPanther PTHR13301:SF21 CELLULOSE 0 16-1102
Seg seg seg NA 27-40
116-128
671-710
998-1010
superfamily SSF53448 Nucleotide-diphospho-sugar 6.7e-08 367-857
superfamily SSF57850 RING/U-box 1.1e-38 37-132
Pseudomolecule
Chromosome Start End Strand
441200624125665-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00001.1 maker exon 7171659 7171739 . + . ID=Zjn_sc00001.1.g12030.1.sm.mkhc:exon:1
Zjn_sc00001.1 maker exon 7171847 7172090 . + . ID=Zjn_sc00001.1.g12030.1.sm.mkhc:exon:2
Zjn_sc00001.1 maker exon 7172179 7172372 . + . ID=Zjn_sc00001.1.g12030.1.sm.mkhc:exon:3
Zjn_sc00001.1 maker exon 7172466 7172568 . + . ID=Zjn_sc00001.1.g12030.1.sm.mkhc:exon:4
Zjn_sc00001.1 maker exon 7172659 7172833 . + . ID=Zjn_sc00001.1.g12030.1.sm.mkhc:exon:5
Zjn_sc00001.1 maker exon 7173436 7173702 . + . ID=Zjn_sc00001.1.g12030.1.sm.mkhc:exon:6
Zjn_sc00001.1 maker exon 7173780 7174125 . + . ID=Zjn_sc00001.1.g12030.1.sm.mkhc:exon:7
Zjn_sc00001.1 maker exon 7174210 7174347 . + . ID=Zjn_sc00001.1.g12030.1.sm.mkhc:exon:8
Zjn_sc00001.1 maker exon 7174453 7174578 . + . ID=Zjn_sc00001.1.g12030.1.sm.mkhc:exon:9
Zjn_sc00001.1 maker exon 7174671 7174883 . + . ID=Zjn_sc00001.1.g12030.1.sm.mkhc:exon:10
Zjn_sc00001.1 maker exon 7174973 7175264 . + . ID=Zjn_sc00001.1.g12030.1.sm.mkhc:exon:11
Zjn_sc00001.1 maker exon 7175365 7175561 . + . ID=Zjn_sc00001.1.g12030.1.sm.mkhc:exon:12
Zjn_sc00001.1 maker exon 7175646 7175996 . + . ID=Zjn_sc00001.1.g12030.1.sm.mkhc:exon:13
Zjn_sc00001.1 maker exon 7176079 7177262 . + . ID=Zjn_sc00001.1.g12030.1.sm.mkhc:exon:14

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