Z. japonica Nagirizaki
Zjn_sc00001.1.g11150.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G60660.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 290 1 288 e-132 100.3 79.3 86.9
Subject 291 1 283
Annot | Symbols: PIP2F, PIP2;4 | plasma membrane intrinsic protein 2;4 | chr5:24375673-24376939 REVERSE LENGTH=291
NR ref|XP_002461930.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 290 1 290 e-150 100 92.4 94.8
Subject 290 1 290
Annot hypothetical protein SORBIDRAFT_02g010760 [Sorghum bicolor] gi|241925307|gb|EER98451.1| hypothetical protein SORBIDRAFT_02g010760 [Sorghum bicolor]
IRGSP Os07t0448800-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 290 1 290 e-146 100 89.3 94.8
Subject 290 1 290
Annot
Sbicolor Sobic.002G124700.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 290 1 290 e-153 100 92.4 94.8
Subject 290 1 290
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00001.1.g11150.1.sm.mkhc length: 290 aa.
IPR000425 Major intrinsic protein
method AccNumber shortName E-value location
Molecular Function GO:0005215 transporter activity    
Biological Process GO:0006810 transport    
Cellular Component GO:0016020 membrane    
FPrintScan PR00783 MINTRINSICP 2.7e-72 42-61
92-116
129-148
178-196
214-236
254-274
HMMPanther PTHR19139 AQUAPORIN 5e-196 15-280
HMMPfam PF00230 MIP 8.9e-84 35-271
HMMTigr TIGR00861 MIP: 7.9e-62 46-271
IPR022357 Major intrinsic protein, conserved site
Molecular Function GO:0005215 transporter activity    
Biological Process GO:0006810 transport    
Cellular Component GO:0016020 membrane    
PatternScan PS00221 MIP NA 110-118
IPR023271 Aquaporin-like
Gene3D G3DSA:1.20.1080.10 no description 1.5e-87 16-280
superfamily SSF81338 Aquaporin-like 1.5e-59 31-275
no_ID  
HMMPanther PTHR19139:SF53 SUBFAMILY 5e-196 15-280
Seg seg seg NA 8-18
78-94
121-136
Pseudomolecule
Chromosome Start End Strand
452001185202389-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00001.1 maker exon 6094935 6095552 . + . ID=Zjn_sc00001.1.g11150.1.sm.mkhc:exon:1
Zjn_sc00001.1 maker exon 6096668 6096808 . + . ID=Zjn_sc00001.1.g11150.1.sm.mkhc:exon:2
Zjn_sc00001.1 maker exon 6096911 6097206 . + . ID=Zjn_sc00001.1.g11150.1.sm.mkhc:exon:3

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