Z. japonica Nagirizaki
Zjn_sc00001.1.g05930.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G23250.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 307 4 253 9e-88 111.1 61.9 68.4
Subject 341 2 326
Annot | Symbols: | Succinyl-CoA ligase, alpha subunit | chr5:7830460-7832491 FORWARD LENGTH=341
NR ref|XP_002460917.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 307 2 253 e-107 108.1 72.3 76.5
Subject 332 4 317
Annot hypothetical protein SORBIDRAFT_02g037420 [Sorghum bicolor] gi|241924294|gb|EER97438.1| hypothetical protein SORBIDRAFT_02g037420 [Sorghum bicolor]
IRGSP Os07t0577700-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 307 2 253 e-100 107.8 71.7 74.9
Subject 331 3 316
Annot
Sbicolor Sobic.002G352200.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 307 9 253 e-106 123.1 70.7 74.3
Subject 378 57 363
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00001.1.g05930.1.sm.mkhc length: 307 aa.
IPR003781 CoA-binding
method AccNumber shortName E-value location
Molecular Function GO:0048037 cofactor binding    
HMMPfam PF02629 CoA_binding 3.7e-32 39-132
HMMSmart SM00881 CoA 3e-36 37-133
IPR005810 Succinyl-CoA ligase, alpha subunit
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
HMMPIR PIRSF001553 Succinyl-CoA 8e-117 16-265
IPR016040 NAD(P)-binding domain
Gene3D G3DSA:3.40.50.720 no description 1.4e-58 36-152
IPR016102 Succinyl-CoA synthetase-like
Gene3D G3DSA:3.40.50.261 no description 4e-22 153-198
199-254
superfamily SSF52210 Succinyl-CoA 5.6e-31 157-254
IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0003878 ATP citrate synthase activity    
Molecular Function GO:0004775 succinate-CoA ligase (ADP-forming) activity    
Biological Process GO:0008152 metabolic process    
PatternScan PS00399 SUCCINYL_COA_LIG_2 NA 209-222
no_ID  
HMMPanther PTHR11117 SUCCINYL-COA 7e-133 15-255
HMMPanther PTHR11117:SF0 SUBFAMILY 7e-133 15-255
Seg seg seg NA 25-31
111-125
superfamily SSF51735 NAD(P)-binding 1.5e-52 34-156
Pseudomolecule
Chromosome Start End Strand
486216478626594+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00001.1 maker exon 2670730 2670750 . - . ID=Zjn_sc00001.1.g05930.1.sm.mkhc:exon:7
Zjn_sc00001.1 maker exon 2671079 2671221 . - . ID=Zjn_sc00001.1.g05930.1.sm.mkhc:exon:6
Zjn_sc00001.1 maker exon 2671628 2671720 . - . ID=Zjn_sc00001.1.g05930.1.sm.mkhc:exon:5
Zjn_sc00001.1 maker exon 2672202 2672283 . - . ID=Zjn_sc00001.1.g05930.1.sm.mkhc:exon:4
Zjn_sc00001.1 maker exon 2674115 2674285 . - . ID=Zjn_sc00001.1.g05930.1.sm.mkhc:exon:3
Zjn_sc00001.1 maker exon 2674642 2674851 . - . ID=Zjn_sc00001.1.g05930.1.sm.mkhc:exon:2
Zjn_sc00001.1 maker exon 2675474 2675677 . - . ID=Zjn_sc00001.1.g05930.1.sm.mkhc:exon:1

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