Z. japonica Nagirizaki
Zjn_sc00001.1.g05720.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G03840.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 721 29 209 3e-79 70.2 18 20.2
Subject 506 40 203
Annot | Symbols: MGP | C2H2 and C2HC zinc fingers superfamily protein | chr1:967596-970058 REVERSE LENGTH=506
NR dbj|BAC79830.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 721 29 721 0.0 87.8 60.5 67.1
Subject 633 29 633
Annot zinc finger protein-like protein [Oryza sativa Japonica Group] gi|50509224|dbj|BAD30494.1| zinc finger protein-like protein [Oryza sativa Japonica Group] gi|125600859|gb|EAZ40435.1| hypothetical protein OsJ_24890 [Oryza sativa Japonica Group]
IRGSP Os07t0581366-00_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 721 59 721 0.0 87.9 58.5 65.2
Subject 634 45 634
Annot
Sbicolor Sobic.002G353700.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 721 345 721 e-116 108.7 40.1 44.4
Subject 784 318 784
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00001.1.g05720.1.sm.mk length: 721 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
HMMPfam PF00096 zf-C2H2 0.0038 74-96
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 76-96
ProfileScan PS50157 ZINC_FINGER_C2H2_2 11.635 74-96
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 0.00013 74-96
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 1.8e+02 74-96
117-147
152-172
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 1.1e-101 28-216
HMMPanther PTHR10593:SF17 SUBFAMILY 1.1e-101 28-216
Seg seg seg NA 7-28
43-58
111-125
214-222
227-242
265-278
294-303
326-349
539-547
671-688
superfamily SSF57667 C2H2 0.00011 147-190
66-101
Pseudomolecule
Chromosome Start End Strand
487491628751769+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00001.1 maker_non_over exon 2545555 2546633 . - . ID=Zjn_sc00001.1.g05720.1.sm.mk:exon:4
Zjn_sc00001.1 maker_non_over exon 2546859 2547379 . - . ID=Zjn_sc00001.1.g05720.1.sm.mk:exon:3
Zjn_sc00001.1 maker_non_over exon 2547525 2547972 . - . ID=Zjn_sc00001.1.g05720.1.sm.mk:exon:2
Zjn_sc00001.1 maker_non_over exon 2548045 2548162 . - . ID=Zjn_sc00001.1.g05720.1.sm.mk:exon:1

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