Z. japonica Nagirizaki
Zjn_sc00001.1.g04840.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G07740.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 209 13 164 8e-64 789 58.9 67
Subject 1649 1296 1491
Annot | Symbols: | actin binding | chr5:2459076-2466580 REVERSE LENGTH=1649
NR ref|XP_008653319.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 209 6 164 6e-73 794.2 71.8 74.6
Subject 1660 1276 1477
Annot PREDICTED: formin-like protein 5 [Zea mays]
IRGSP Os07t0596300-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 209 6 164 7e-73 354.5 73.2 75.1
Subject 741 356 558
Annot
Sbicolor Sobic.002G362800.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 209 6 164 5e-76 772.2 71.8 74.6
Subject 1614 1230 1431
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00001.1.g04840.1.sm.mkhc length: 209 aa.
IPR015425 Formin, FH2 domain
method AccNumber shortName E-value location
HMMPfam PF02181 FH2 7.1e-23 14-103
101-163
ProfileScan PS51444 FH2 12.317 1-209
superfamily SSF101447 Formin 7.9e-51 27-207
IPR027643 Formin-like family, viridiplantae
Cellular Component GO:0005884 actin filament    
Biological Process GO:0045010 actin nucleation    
HMMPanther PTHR23213:SF18 FORMIN-RELATED 1.7e-82 8-207
no_ID  
HMMPanther PTHR23213 FORMIN-RELATED 1.7e-82 8-207
Seg seg seg NA 9-26
108-120
Pseudomolecule
Chromosome Start End Strand
491697359176259-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00001.1 maker exon 2121065 2121306 . + . ID=Zjn_sc00001.1.g04840.1.sm.mkhc:exon:1
Zjn_sc00001.1 maker exon 2121560 2121639 . + . ID=Zjn_sc00001.1.g04840.1.sm.mkhc:exon:2
Zjn_sc00001.1 maker exon 2122838 2122909 . + . ID=Zjn_sc00001.1.g04840.1.sm.mkhc:exon:3
Zjn_sc00001.1 maker exon 2122983 2123081 . + . ID=Zjn_sc00001.1.g04840.1.sm.mkhc:exon:4
Zjn_sc00001.1 maker exon 2123164 2123205 . + . ID=Zjn_sc00001.1.g04840.1.sm.mkhc:exon:5
Zjn_sc00001.1 maker exon 2124074 2124155 . + . ID=Zjn_sc00001.1.g04840.1.sm.mkhc:exon:6
Zjn_sc00001.1 maker exon 2124979 2125073 . + . ID=Zjn_sc00001.1.g04840.1.sm.mkhc:exon:7
Zjn_sc00001.1 maker exon 2126444 2126512 . + . ID=Zjn_sc00001.1.g04840.1.sm.mkhc:exon:8
Zjn_sc00001.1 maker exon 2126592 2126658 . + . ID=Zjn_sc00001.1.g04840.1.sm.mkhc:exon:9
Zjn_sc00001.1 maker exon 2127053 2127300 . + . ID=Zjn_sc00001.1.g04840.1.sm.mkhc:exon:10
Zjn_sc00001.1 maker exon 2127380 2127589 . + . ID=Zjn_sc00001.1.g04840.1.sm.mkhc:exon:11

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