Z. japonica Nagirizaki
Zjn_sc00001.1.g04220.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G69120.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 106 1 83 3e-32 241.5 59.4 67.9
Subject 256 1 83
Annot | Symbols: AP1, AGL7 | K-box region and MADS-box transcription factor family protein | chr1:25982576-25986102 REVERSE LENGTH=256
NR ref|XP_002460989.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 106 1 88 1e-41 238.7 75.5 79.2
Subject 253 1 88
Annot hypothetical protein SORBIDRAFT_02g038780 [Sorghum bicolor] gi|241924366|gb|EER97510.1| hypothetical protein SORBIDRAFT_02g038780 [Sorghum bicolor]
IRGSP Os07t0605200-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 106 1 88 1e-42 234.9 70.8 77.4
Subject 249 1 88
Annot
Sbicolor Sobic.002G368700.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 106 1 88 8e-45 238.7 75.5 79.2
Subject 253 1 88
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00001.1.g04220.1.sm.mkhc length: 106 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 4.8e-31 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 1.1e-28 10-59
HMMSmart SM00432 no description 3.3e-38 1-60
ProfileScan PS50066 MADS_BOX_2 31.651 1-61
superfamily SSF55455 SRF-like 2e-31 2-95
no_ID  
HMMPanther PTHR11945 MADS 1.6e-47 1-78
HMMPanther PTHR11945:SF19 MADS 1.6e-47 1-78
Pseudomolecule
Chromosome Start End Strand
494397499445031+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00001.1 maker exon 1852293 1852829 . - . ID=Zjn_sc00001.1.g04220.1.sm.mkhc:exon:4
Zjn_sc00001.1 maker exon 1854694 1854735 . - . ID=Zjn_sc00001.1.g04220.1.sm.mkhc:exon:3
Zjn_sc00001.1 maker exon 1855155 1855233 . - . ID=Zjn_sc00001.1.g04220.1.sm.mkhc:exon:2
Zjn_sc00001.1 maker exon 1857391 1857575 . - . ID=Zjn_sc00001.1.g04220.1.sm.mkhc:exon:1

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