Z. japonica Nagirizaki
Zjn_sc00001.1.g03660.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G14130.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 406 7 406 e-125 89.4 56.2 73.4
Subject 363 5 363
Annot | Symbols: | Aldolase-type TIM barrel family protein | chr3:4685844-4687852 REVERSE LENGTH=363
NR ref|XP_004958307.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 406 1 406 e-167 90.4 76.4 81.8
Subject 367 1 367
Annot PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [Setaria italica] gi|514736040|ref|XP_004958308.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [Setaria italica] gi|514736044|ref|XP_004958309.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [Setaria italica] gi|514736048|ref|XP_004958310.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [Setaria italica]
IRGSP Os07t0616500-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 406 1 406 e-159 90.1 72.4 79.8
Subject 366 1 366
Annot
Sbicolor Sobic.002G374700.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 406 1 406 e-160 90.6 74.6 80
Subject 368 1 368
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00001.1.g03660.1.am.mkhc length: 406 aa.
IPR000262 FMN-dependent dehydrogenase
method AccNumber shortName E-value location
Molecular Function GO:0016491 oxidoreductase activity    
HMMPfam PF01070 FMN_dh 4.8e-129 16-396
IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
PatternScan PS00557 FMN_HYDROXY_ACID_DH_1 NA 293-299
IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent
Molecular Function GO:0010181 FMN binding    
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
HMMPIR PIRSF000138 Alpha-hydroxy 2.3e-156 1-406
ProfileScan PS51349 FMN_HYDROXY_ACID_DH_2 109.238 1-400
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.20.20.70 no description 4.8e-141 242-399
no_ID  
HMMPanther PTHR10578 (S)-2-HYDROXY-ACID 1.1e-152 7-398
HMMPanther PTHR10578:SF9 (S)-2-HYDROXY-ACID 1.1e-152 7-398
Seg seg seg NA 94-101
239-247
superfamily SSF51395 FMN-linked 2.6e-109 5-398
Pseudomolecule
Chromosome Start End Strand
496635809667483+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00001.1 maker exon 1629841 1630020 . - . ID=Zjn_sc00001.1.g03660.1.am.mkhc:exon:12
Zjn_sc00001.1 maker exon 1630104 1630208 . - . ID=Zjn_sc00001.1.g03660.1.am.mkhc:exon:11
Zjn_sc00001.1 maker exon 1630342 1630442 . - . ID=Zjn_sc00001.1.g03660.1.am.mkhc:exon:10
Zjn_sc00001.1 maker exon 1630574 1630699 . - . ID=Zjn_sc00001.1.g03660.1.am.mkhc:exon:9
Zjn_sc00001.1 maker exon 1630903 1631022 . - . ID=Zjn_sc00001.1.g03660.1.am.mkhc:exon:8
Zjn_sc00001.1 maker exon 1631082 1631144 . - . ID=Zjn_sc00001.1.g03660.1.am.mkhc:exon:7
Zjn_sc00001.1 maker exon 1631447 1631576 . - . ID=Zjn_sc00001.1.g03660.1.am.mkhc:exon:6
Zjn_sc00001.1 maker exon 1631666 1631743 . - . ID=Zjn_sc00001.1.g03660.1.am.mkhc:exon:5
Zjn_sc00001.1 maker exon 1631841 1631887 . - . ID=Zjn_sc00001.1.g03660.1.am.mkhc:exon:4
Zjn_sc00001.1 maker exon 1631979 1632103 . - . ID=Zjn_sc00001.1.g03660.1.am.mkhc:exon:3
Zjn_sc00001.1 maker exon 1632179 1632326 . - . ID=Zjn_sc00001.1.g03660.1.am.mkhc:exon:2
Zjn_sc00001.1 maker exon 1633420 1633744 . - . ID=Zjn_sc00001.1.g03660.1.am.mkhc:exon:1

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