Z. japonica Nagirizaki
Zjn_sc00001.1.g02950.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G03760.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 324 71 309 4e-88 164.5 46.6 56.2
Subject 533 32 265
Annot | Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 | Nucleotide-diphospho-sugar transferases superfamily protein | chr5:985910-990087 REVERSE LENGTH=533
NR ref|XP_004958412.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 324 1 309 e-141 175.9 79 85.5
Subject 570 1 304
Annot PREDICTED: probable mannan synthase 7 [Setaria italica]
IRGSP Os07t0630900-02_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 324 1 309 e-125 180.6 71.3 79.6
Subject 585 2 317
Annot
Sbicolor Sobic.002G385800.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 324 1 309 e-143 176.9 79.9 87
Subject 573 1 305
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00001.1.g02950.1.sm.mkhc length: 324 aa.
no_ID  
method AccNumber shortName E-value location
Gene3D G3DSA:3.90.550.10 no description 6.9e-14 141-288
HMMPanther PTHR32044 FAMILY 2.1e-161 67-309
HMMPanther PTHR32044:SF1 SUBFAMILY 2.1e-161 67-309
HMMPfam PF13641 Glyco_tranf_2_3 1.7e-19 142-300
Seg seg seg NA 14-29
60-73
superfamily SSF53448 Nucleotide-diphospho-sugar 7.1e-28 138-313
Pseudomolecule
Chromosome Start End Strand
499727029981120+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00001.1 maker exon 1316204 1320696 . - . ID=Zjn_sc00001.1.g02950.1.sm.mkhc:exon:10
Zjn_sc00001.1 maker exon 1320775 1320966 . - . ID=Zjn_sc00001.1.g02950.1.sm.mkhc:exon:9
Zjn_sc00001.1 maker exon 1321057 1321256 . - . ID=Zjn_sc00001.1.g02950.1.sm.mkhc:exon:8
Zjn_sc00001.1 maker exon 1321338 1321451 . - . ID=Zjn_sc00001.1.g02950.1.sm.mkhc:exon:7
Zjn_sc00001.1 maker exon 1321533 1321669 . - . ID=Zjn_sc00001.1.g02950.1.sm.mkhc:exon:6
Zjn_sc00001.1 maker exon 1321721 1321848 . - . ID=Zjn_sc00001.1.g02950.1.sm.mkhc:exon:5
Zjn_sc00001.1 maker exon 1322310 1322562 . - . ID=Zjn_sc00001.1.g02950.1.sm.mkhc:exon:4
Zjn_sc00001.1 maker exon 1323767 1323865 . - . ID=Zjn_sc00001.1.g02950.1.sm.mkhc:exon:3
Zjn_sc00001.1 maker exon 1324048 1324400 . - . ID=Zjn_sc00001.1.g02950.1.sm.mkhc:exon:2
Zjn_sc00001.1 maker exon 1324514 1324622 . - . ID=Zjn_sc00001.1.g02950.1.sm.mkhc:exon:1

Top