Z. japonica Nagirizaki
Zjn_sc00001.1.g01810.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G04140.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1392 1 873 0.0 116.5 51.2 56.5
Subject 1622 128 1045
Annot | Symbols: GLU1, GLS1, GLUS, FD-GOGAT | glutamate synthase 1 | chr5:1130031-1138186 FORWARD LENGTH=1622
NR ref|XP_002463318.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1392 1 873 0.0 107.8 58.8 60.2
Subject 1500 1 918
Annot hypothetical protein SORBIDRAFT_02g041740 [Sorghum bicolor] gi|241926695|gb|EER99839.1| hypothetical protein SORBIDRAFT_02g041740 [Sorghum bicolor]
IRGSP Os07t0658400-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1392 1 669 0.0 56.5 43.4 45
Subject 787 119 787
Annot
Sbicolor Sobic.002G402700.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1392 1 873 0.0 116.4 58.8 60.2
Subject 1620 121 1038
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00001.1.g01810.1.am.mkhc length: 1392 aa.
IPR000583 Class II glutamine amidotransferase domain
method AccNumber shortName E-value location
Biological Process GO:0008152 metabolic process    
HMMPfam PF00310 GATase_2 1.6e-123 2-350
IPR002489 Glutamate synthase, alpha subunit, C-terminal
Biological Process GO:0008152 metabolic process    
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
Gene3D G3DSA:2.160.20.60 no description 6.9e-20 970-1080
1081-1169
HMMPfam PF01493 GXGXG 3.4e-08 985-1081
1080-1127
superfamily SSF69336 Alpha 7.4e-56 952-1173
IPR002932 Glutamate synthase, central-C
Biological Process GO:0006537 glutamate biosynthetic process    
Molecular Function GO:0015930 glutamate synthase activity    
Molecular Function GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF01645 Glu_synthase 1.7e-12 779-845
866-912
IPR006982 Glutamate synthase, central-N
Biological Process GO:0006807 nitrogen compound metabolic process    
Molecular Function GO:0015930 glutamate synthase activity    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF04898 Glu_syn_central 2.7e-116 426-721
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.20.20.70 no description 1e-13 417-768
866-937
IPR017932 Glutamine amidotransferase type 2 domain
ProfileScan PS51278 GATASE_TYPE_2 18.050 1-378
no_ID  
Gene3D G3DSA:3.60.20.10 no description 2.7e-156 2-406
HMMPanther PTHR11938 FAD 0 1-1178
HMMPanther PTHR11938:SF44 OXIDOREDUCTASE, 0 1-1178
Seg seg seg NA 526-547
1200-1221
1244-1260
1283-1297
1366-1377
superfamily SSF51395 FMN-linked 2.3e-16 421-846
865-937
superfamily SSF56235 N-terminal 5.6e-172 2-405
Pseudomolecule
Chromosome Start End Strand
41050086910516918-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00001.1 maker exon 780406 780444 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:1
Zjn_sc00001.1 maker exon 781143 781455 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:2
Zjn_sc00001.1 maker exon 782474 782916 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:3
Zjn_sc00001.1 maker exon 783069 783200 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:4
Zjn_sc00001.1 maker exon 783398 783496 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:5
Zjn_sc00001.1 maker exon 783574 783644 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:6
Zjn_sc00001.1 maker exon 784118 784214 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:7
Zjn_sc00001.1 maker exon 785042 785134 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:8
Zjn_sc00001.1 maker exon 785227 785372 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:9
Zjn_sc00001.1 maker exon 786067 786226 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:10
Zjn_sc00001.1 maker exon 786750 786860 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:11
Zjn_sc00001.1 maker exon 786943 787158 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:12
Zjn_sc00001.1 maker exon 788000 788157 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:13
Zjn_sc00001.1 maker exon 788700 788829 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:14
Zjn_sc00001.1 maker exon 789037 789095 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:15
Zjn_sc00001.1 maker exon 789195 789300 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:16
Zjn_sc00001.1 maker exon 789563 789659 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:17
Zjn_sc00001.1 maker exon 790014 790129 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:18
Zjn_sc00001.1 maker exon 790209 790299 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:19
Zjn_sc00001.1 maker exon 790563 790645 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:20
Zjn_sc00001.1 maker exon 792571 792690 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:21
Zjn_sc00001.1 maker exon 792837 792911 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:22
Zjn_sc00001.1 maker exon 793243 793341 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:23
Zjn_sc00001.1 maker exon 793587 793729 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:24
Zjn_sc00001.1 maker exon 793815 793908 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:25
Zjn_sc00001.1 maker exon 793975 794063 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:26
Zjn_sc00001.1 maker exon 794372 794450 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:27
Zjn_sc00001.1 maker exon 794594 794677 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:28
Zjn_sc00001.1 maker exon 794781 794889 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:29
Zjn_sc00001.1 maker exon 795080 795155 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:30
Zjn_sc00001.1 maker exon 795861 796455 . + . ID=Zjn_sc00001.1.g01810.1.am.mkhc:exon:31

Top